Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13600 139 / 1e-41 bZIP ATBZIP58 basic leucine-zipper 58 (.1) AT3G30530 137 / 4e-41 bZIP ATBZIP42 basic leucine-zipper 42 (.1) AT2G04038 123 / 1e-35 bZIP ATBZIP48 basic leucine-zipper 48 (.1) AT5G38800 114 / 5e-32 bZIP ATBZIP43 basic leucine-zipper 43 (.1) AT5G15830 111 / 6e-31 bZIP ATBZIP3 basic leucine-zipper 3 (.1) AT1G68880 92 / 7e-24 bZIP ATBZIP basic leucine-zipper 8 (.1) AT5G60830 76 / 7e-17 bZIP ATBZIP70 basic leucine-zipper 70 (.1) AT2G18160 71 / 3e-15 bZIP GBF5, ATBZIP2 G-BOX BINDING FACTOR 5, basic leucine-zipper 2 (.1) AT3G62420 69 / 9e-15 bZIP ATBZIP53 basic region/leucine zipper motif 53 (.1) AT1G75390 66 / 5e-14 bZIP ATBZIP44 basic leucine-zipper 44 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G135200 [exp] 342 / 5e-121 AT3G30530 131 / 2e-38 basic leucine-zipper 42 (.1) Potri.004G111100 [exp] 201 / 4e-66 AT3G30530 156 / 9e-49 basic leucine-zipper 42 (.1) Potri.017G106700 [exp] 199 / 3e-65 AT3G30530 169 / 1e-53 basic leucine-zipper 42 (.1) Potri.015G047700 [exp] 95 / 3e-24 AT5G60830 86 / 8e-21 basic leucine-zipper 70 (.1) Potri.014G007100 [exp] 85 / 2e-20 AT3G49760 120 / 6e-35 basic leucine-zipper 5 (.1) Potri.007G006900 [exp] 84 / 7e-20 AT2G22850 118 / 1e-32 basic leucine-zipper 6 (.1.2) Potri.009G119700 [exp] 79 / 1e-18 AT4G34590 154 / 9e-49 Arabidopsis thaliana basic leucine-zipper 11, G-box binding factor 6 (.1) Potri.004G158200 [exp] 79 / 1e-18 AT1G75390 152 / 8e-48 basic leucine-zipper 44 (.1.2) Potri.014G013400 [exp] 74 / 5e-17 AT1G59530 77 / 8e-19 basic leucine-zipper 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029101 [exp] 161 / 5e-50 AT3G30530 148 / 5e-45 basic leucine-zipper 42 (.1) Lus10013059 [exp] 159 / 5e-49 AT3G30530 147 / 8e-45 basic leucine-zipper 42 (.1) Lus10011722 [exp] 84 / 6e-20 AT3G49760 120 / 2e-34 basic leucine-zipper 5 (.1) Lus10011557 [exp] 76 / 2e-17 AT3G49760 87 / 9e-23 basic leucine-zipper 5 (.1) Lus10028333 [exp] 71 / 5e-15 AT1G75390 134 / 5e-40 basic leucine-zipper 44 (.1.2) Lus10007726 [exp] 69 / 7e-15 AT3G49760 84 / 3e-21 basic leucine-zipper 5 (.1) Lus10019273 [exp] 69 / 2e-14 AT2G22850 94 / 2e-23 basic leucine-zipper 6 (.1.2) Lus10041780 [exp] 69 / 2e-14 AT1G75390 135 / 2e-40 basic leucine-zipper 44 (.1.2) Lus10024279 [exp] 67 / 4e-14 AT1G75390 166 / 6e-53 basic leucine-zipper 44 (.1.2) Lus10018662 [exp] 66 / 7e-14 AT3G49760 82 / 2e-20 basic leucine-zipper 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0018 [poplar] [flax] bZIP PF00170 [poplar] [flax] bZIP_1 bZIP transcription factor
Representative CDS sequence Show only first row Show all	>Potri.008G113400.1 pacid=42806898 polypeptide=Potri.008G113400.1.p locus=Potri.008G113400 ID=Potri.008G113400.1.v4.1 annot-version=v4.1 ATGCTTCCAGGCGAGCTCACAGGAATTCACTATATAGCACCTGATCAAAGCCTGATTCCTTTCCCGGCTAATTTCGGCATGATGCAACAAAGCAGCATAC CAGCCTTCCATTTCAACAGACTCTTGAACAACTTGCAGAGCTCATCGTTCCCGCAACCGGTTCGTGAATTCACTCCACAGTCCTCAAGTCTCAGCAACAA CTCAACTTCAGATGAATCTGAGGAGCACCAACTCAGCATCATCGACGAGAGGAAGCAACGGAGAATGATTTCCAATAGAGAATCTGCTCGCAGGTCAAGG ATGAGGAAACAGAAGCACCTAGATGAGCTATGGACTCAGGTAGTTCGGCTGCGAACTGAGAACCACAATCTGATAGACAAGCTGAATCATGTGTCTGAGT GTCATGACCGGGTTCTTCAAGAGAATGCACGGCTCAAAAAAGAAGCTTCTGATCTTCGCCAAATGATTACTGACCTGCAAATTGGCAGCCCTTACACTGC CACTGCTTTAAGAGATCTTGAAGAGGTCCCCTGCAACACAGCCCATGTCAGAGCTGAATCCTCAAACCAATCTGTCACTAGTTCTGTAGACTTGCTTCAT TGA
AA sequence Show only first row Show all	>Potri.008G113400.1 pacid=42806898 polypeptide=Potri.008G113400.1.p locus=Potri.008G113400 ID=Potri.008G113400.1.v4.1 annot-version=v4.1 MLPGELTGIHYIAPDQSLIPFPANFGMMQQSSIPAFHFNRLLNNLQSSSFPQPVREFTPQSSSLSNNSTSDESEEHQLSIIDERKQRRMISNRESARRSR MRKQKHLDELWTQVVRLRTENHNLIDKLNHVSECHDRVLQENARLKKEASDLRQMITDLQIGSPYTATALRDLEEVPCNTAHVRAESSNQSVTSSVDLLH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G13600	bZIP	ATBZIP58	basic leucine-zipper 58 (.1)		Potri.008G113400 [exp]	0	1
AT4G21620			glycine-rich protein (.1.2)		Potri.004G036500 [exp]	2.64	0.8617
AT5G04770		CAT6, ATCAT6	ARABIDOPSIS THALIANA CATIONIC ...		Potri.001G150700 [exp]	4.24	0.8184	PtrCAT7
AT1G54200			unknown protein		Potri.003G063400 [exp]	4.89	0.7994
AT3G46130	MYB	PFG3, ATMYB111 ...	myb domain protein 48 (.1.2.3....		Potri.009G027300 [exp]	5.83	0.8192	MYB111.1,MYB023
AT4G11130		SMD1, RDR2	SILENCING MOVEMENT DEFICIENT 1...		Potri.015G073700 [exp]	6.00	0.7411	RDR904
AT2G37050			Leucine-rich repeat protein ki...		Potri.006G132100 [exp]	10.00	0.7336
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Potri.008G196500 [exp]	10.72	0.7179	CLA1.1
AT1G49320		ATUSPL1	unknown seed protein like 1 (....		Potri.009G114300 [exp]	11.61	0.7897
AT2G17820		AHK1, ATHK1	histidine kinase 1 (.1)		Potri.005G111700 [exp]	11.83	0.7737	ATHK1.3
AT4G31330			Protein of unknown function, D...		Potri.006G278000 [exp]	15.68	0.7795

Compare expression of checked genes

Potri.008G113400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.