Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	GND.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02360 874 / 0 6-phosphogluconate dehydrogenase family protein (.1.2) AT5G41670 761 / 0 6-phosphogluconate dehydrogenase family protein (.1.2) AT1G64190 755 / 0 6-phosphogluconate dehydrogenase family protein (.1) AT3G25530 47 / 2e-05 GR1, GLYR1, GHBDH, ATGHBDH glyoxylate reductase 1 (.1.2) AT4G29120 45 / 8e-05 6-phosphogluconate dehydrogenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G106900 [exp] 901 / 0 AT3G02360 918 / 0.0 6-phosphogluconate dehydrogenase family protein (.1.2) Potri.004G108920 [exp] 900 / 0 AT3G02360 884 / 0.0 6-phosphogluconate dehydrogenase family protein (.1.2) Potri.004G108880 [exp] 887 / 0 AT3G02360 868 / 0.0 6-phosphogluconate dehydrogenase family protein (.1.2) Potri.001G095800 [exp] 750 / 0 AT5G41670 897 / 0.0 6-phosphogluconate dehydrogenase family protein (.1.2) Potri.003G135600 [exp] 750 / 0 AT5G41670 889 / 0.0 6-phosphogluconate dehydrogenase family protein (.1.2) Potri.014G197900 [exp] 47 / 1e-05 AT3G25530 463 / 1e-166 glyoxylate reductase 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034102 [exp] 884 / 0 AT3G02360 897 / 0.0 6-phosphogluconate dehydrogenase family protein (.1.2) Lus10003043 [exp] 884 / 0 AT3G02360 897 / 0.0 6-phosphogluconate dehydrogenase family protein (.1.2) Lus10024725 [exp] 765 / 0 AT5G41670 896 / 0.0 6-phosphogluconate dehydrogenase family protein (.1.2) Lus10032341 [exp] 763 / 0 AT5G41670 893 / 0.0 6-phosphogluconate dehydrogenase family protein (.1.2) Lus10029098 [exp] 81 / 3e-18 AT3G02360 85 / 2e-20 6-phosphogluconate dehydrogenase family protein (.1.2) Lus10012301 [exp] 49 / 5e-06 AT3G25530 434 / 3e-155 glyoxylate reductase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0106 [poplar] [flax] 6PGD_C PF00393 [poplar] [flax] 6PGD 6-phosphogluconate dehydrogenase, C-terminal domain CL0063 [poplar] [flax] NADP_Rossmann PF03446 [poplar] [flax] NAD_binding_2 NAD binding domain of 6-phosphogluconate dehydrogenase
Representative CDS sequence Show only first row Show all	>Potri.008G113700.2 pacid=42807512 polypeptide=Potri.008G113700.2.p locus=Potri.008G113700 ID=Potri.008G113700.2.v4.1 annot-version=v4.1 ATGGCTCCCCTGACCAGAATTGGCCTAGCTGGCCTTGCTGTCATGGGTCAAAATCTTGCCCTCAATATTGCTGAGAAAGGATTTCCTATTTCTGTGTATA ATCGGACCACCTTAAAAGTTGATGAGACAGTTGAACGAGCCAAGCAGGAGGGAGATCTTCCCTTATATGGTTTCCATGATCCTGAATCCTTTGTTAAGTC AATCCAAAAACCTCGTGTGATAATCATACTTGTTAAGGCCGGTGCCCCTGTCGACCAAACCATCAAAACACTGTCAGTTTACATGGAGAAAGGGGATTGT ATCATAGATGGTGGTAATGAATGGTATGAGAACACTGAGAGGAGGGAGAAAGCCTTGGCTGAATTAGGTTTGCTTTATCTTGGAATGGGAGTTTCAGGTG GTGAAGATGGTGCTCGGCATGGACCATCTTTAATGCCAGGTGGTTCCTTTGAGGCCTACAAACACATAGAAGATATCCTTCTTAAGGTGGCTGCTCAAGT TCCTGATAGTGGTCCTTGTGTCACTTATATTGGCAAAGGAGGATCTGGCAATTTTGTTAAGATGGTTCACAATGGGATAGAATATGGTGATATGCAGCTG ATTGCAGAGGCCTATGATGTTCTGAAATCAGTTGGGAAGCTCACCAACGAGGAACTATGCCAGGTTTTCTCTGAATGGAACAAGGGGGAGCTGCTGAGTT TCTTGATTGAGATCACTGCAGATATATTTGGAATTAAGGATGACAAGGGAGAAGGATATTTGGTCGACAAGGTATTGGATAAAACTGGCATGAAGGGTAC TGGTAAGTGGACGGTTCAGCAAGCTGCTGAGTTGTCAGTTGCTGCTCCCACTATAGCGTCATCCTTGGATGGAAGATTCCTCAGTGGCCTGAAGGAAGAA AGAGTTGAAGCTGCAAAAGTCTTCAAATCAAGCGGCATCATAGACATGCTAGCTGACCAAGTCGTGGATAAGGAAAAATTGATCTATGATGTGAGACAAG CACTATATGTGTCCAAAATATGCAGCTATGCCCAGGGTATGAACTTGATACGTGCAAAGAGTGCTGAAAAGGGATGGGATTTGAAACTGGGGCAGTTAAC AAGGATTTGGAAGGGTGGTTGCATTATCCGTGCTGTCTTCTTGGACCGTATTAAGAAGGCTTATGATAGAAACCCAAACCTGCCTAATCTTCTTGTGGAT CCAGAATTTGCAAAAGAAATTATTGAGAGACAATCTGCTTGGAGAAGAGTTGTATCCATTGCTATCAACTCTGGTATCAGCACCCCTGGTATGTCTTCTA GCCTTGCGTATTTTGACACATACAGGAGGTCCAGGCTGCCTGCTAATTTAGTCCAAGCTCAACGAGATTATTTTGGAGCACATACATATGAGAGGATTGA TATAGATGGATCCTTCCATACTGAGTGGTTTAAAATTGCTAAACAGTCAAAGATCTAA
AA sequence Show only first row Show all	>Potri.008G113700.2 pacid=42807512 polypeptide=Potri.008G113700.2.p locus=Potri.008G113700 ID=Potri.008G113700.2.v4.1 annot-version=v4.1 MAPLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTLKVDETVERAKQEGDLPLYGFHDPESFVKSIQKPRVIIILVKAGAPVDQTIKTLSVYMEKGDC IIDGGNEWYENTERREKALAELGLLYLGMGVSGGEDGARHGPSLMPGGSFEAYKHIEDILLKVAAQVPDSGPCVTYIGKGGSGNFVKMVHNGIEYGDMQL IAEAYDVLKSVGKLTNEELCQVFSEWNKGELLSFLIEITADIFGIKDDKGEGYLVDKVLDKTGMKGTGKWTVQQAAELSVAAPTIASSLDGRFLSGLKEE RVEAAKVFKSSGIIDMLADQVVDKEKLIYDVRQALYVSKICSYAQGMNLIRAKSAEKGWDLKLGQLTRIWKGGCIIRAVFLDRIKKAYDRNPNLPNLLVD PEFAKEIIERQSAWRRVVSIAINSGISTPGMSSSLAYFDTYRRSRLPANLVQAQRDYFGAHTYERIDIDGSFHTEWFKIAKQSKI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G02360			6-phosphogluconate dehydrogena...		Potri.008G113700 [exp]	0	1	GND.1
AT4G05420		DDB1A	damaged DNA binding protein 1A...		Potri.001G357900 [exp]	4.12	0.6092	Pt-DDB1.1
AT3G19640		MRS2-3, MGT4	magnesium transporter 4 (.1)		Potri.009G086300 [exp]	7.93	0.5400
AT4G01370		ATMPK4	MAP kinase 4 (.1)		Potri.003G131800 [exp]	20.12	0.5441	MMK3.1
AT5G57970			DNA glycosylase superfamily pr...		Potri.006G184700 [exp]	21.90	0.5297
AT1G02816			Protein of unknown function, D...		Potri.014G127600 [exp]	26.45	0.5224
AT3G19184	B3		AP2/B3-like transcriptional fa...		Potri.005G137600 [exp]	50.83	0.4931
AT1G23780			F-box family protein (.1)		Potri.005G109700 [exp]	71.51	0.4877
AT4G39090		EMB3005, RD19A,...	RESPONSIVE TO DEHYDRATION 19A,...		Potri.004G160300 [exp]	78.13	0.4950	RD19.3
AT2G32730			26S proteasome regulatory comp...		Potri.001G314300 [exp]	82.76	0.4993
AT1G20330		FRL1, CVP1, SMT...	FRILL1, COTYLEDON VASCULAR PAT...		Potri.002G016300 [exp]	95.18	0.4919	Pt-SMT1.1

Compare expression of checked genes

Potri.008G113700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.