Plant FIBer expression Database

Potri.008G113800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G134800
[exp]
142 / 3e-44 ND /
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.008G113800.1 pacid=42807469 polypeptide=Potri.008G113800.1.p locus=Potri.008G113800 ID=Potri.008G113800.1.v4.1 annot-version=v4.1
ATGGAGTTTTCCCAAACCCTAGGACGCGAAGAGGAGTGTAGTGGGACTAGTGGCAGTGAGTCTGGGTGGACAAGCTATATTGCCTCCCCCATCAAAGAAA
ACAACTTCGATGATGATAATGATGATAGCAAGAATAAACAAGGTGATTGCAGAGAAGGTAATTATGAGAGTGATGACTCTATGGCCTCAGATGCCTCTTC
TGGTCCAAGTCATCCTGAACTTCCATGCAGGATCAACGAGGGAAGCATTAACAAAGGTCCTTTTAAGAATGCAACTACCAAATATTCATCGAAAGAAAAA
CTTCACAGGCAAGTGAAGCGAAGAGATGGAGCAAGGACCACAGTAAAAAAGGAAGTATCAGTGCTGAAGGCAAACAGTGCTGCTAGTCATGATCATGTGC
AAAGTGGAACCAAGGTAAGAAAATCAACTACTTGA
AA sequence
>Potri.008G113800.1 pacid=42807469 polypeptide=Potri.008G113800.1.p locus=Potri.008G113800 ID=Potri.008G113800.1.v4.1 annot-version=v4.1
MEFSQTLGREEECSGTSGSESGWTSYIASPIKENNFDDDNDDSKNKQGDCREGNYESDDSMASDASSGPSHPELPCRINEGSINKGPFKNATTKYSSKEK
LHRQVKRRDGARTTVKKEVSVLKANSAASHDHVQSGTKVRKSTT

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.008G113800
[exp]
0 1
AT1G15230 unknown protein Potri.003G053500
[exp]
3.87 0.8190
AT2G26470 unknown protein Potri.002G250400
[exp]
8.60 0.8323
AT4G05430 Carbohydrate-binding X8 domain... Potri.007G111000
[exp]
12.00 0.8269
AT3G47180 RING/U-box superfamily protein... Potri.005G180300
[exp]
14.96 0.7992
AT3G26350 unknown protein Potri.010G049000
[exp]
20.34 0.8225
Potri.012G073800
[exp]
21.07 0.7441
AT3G21175 GATA GATA24, TIFY2B,... ZIM LIKE 1, GATA TRANSCRIPTION... Potri.007G116700
[exp]
27.34 0.6585
AT1G69010 bHLH bHLH102, BIM2 BES1-interacting Myc-like prot... Potri.004G112900
[exp]
27.92 0.7320
Potri.003G217500
[exp]
34.89 0.8034
AT3G62100 AUX_IAA IAA30 indole-3-acetic acid inducible... Potri.002G186400
[exp]
36.12 0.7493 IAA4.1

Potri.008G113800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.