Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13580 438 / 4e-156 LOH3, LAG13 LAG One Homologue 3, LAG1 longevity assurance homolog 3 (.1.2.3) AT3G25540 394 / 1e-138 LAG1 LONGEVITY ASSURANCE GENE 1, TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1) AT1G26200 315 / 2e-107 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1) AT3G19260 221 / 1e-70 LOH2, LAG1 HOMOLOG 2, LAG1 HOMO, LAG1HOMOLOG2 LONGEVITY ASSURANCE GENE1 HOMOLOG 2, LAG1 homologue 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G134700 [exp] 501 / 0 AT1G13580 444 / 1e-158 LAG One Homologue 3, LAG1 longevity assurance homolog 3 (.1.2.3) Potri.015G055000 [exp] 382 / 6e-134 AT1G13580 378 / 3e-132 LAG One Homologue 3, LAG1 longevity assurance homolog 3 (.1.2.3) Potri.009G101800 [exp] 224 / 5e-72 AT3G19260 334 / 2e-115 LONGEVITY ASSURANCE GENE1 HOMOLOG 2, LAG1 homologue 2 (.1) Potri.004G141000 [exp] 221 / 1e-70 AT3G19260 364 / 2e-127 LONGEVITY ASSURANCE GENE1 HOMOLOG 2, LAG1 homologue 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030571 [exp] 464 / 1e-165 AT1G13580 491 / 2e-176 LAG One Homologue 3, LAG1 longevity assurance homolog 3 (.1.2.3) Lus10030918 [exp] 461 / 9e-165 AT1G13580 490 / 4e-176 LAG One Homologue 3, LAG1 longevity assurance homolog 3 (.1.2.3) Lus10029096 [exp] 441 / 6e-157 AT1G13580 487 / 2e-175 LAG One Homologue 3, LAG1 longevity assurance homolog 3 (.1.2.3) Lus10013063 [exp] 438 / 4e-156 AT1G13580 469 / 3e-168 LAG One Homologue 3, LAG1 longevity assurance homolog 3 (.1.2.3) Lus10013494 [exp] 310 / 1e-105 AT1G13580 381 / 1e-133 LAG One Homologue 3, LAG1 longevity assurance homolog 3 (.1.2.3) Lus10007964 [exp] 302 / 4e-102 AT1G13580 383 / 3e-134 LAG One Homologue 3, LAG1 longevity assurance homolog 3 (.1.2.3) Lus10019859 [exp] 204 / 3e-64 AT3G19260 343 / 7e-119 LONGEVITY ASSURANCE GENE1 HOMOLOG 2, LAG1 homologue 2 (.1) Lus10014055 [exp] 203 / 6e-64 AT3G19260 316 / 2e-108 LONGEVITY ASSURANCE GENE1 HOMOLOG 2, LAG1 homologue 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03798 [poplar] [flax] TRAM_LAG1_CLN8 TLC domain
Representative CDS sequence Show only first row Show all	>Potri.008G113900.3 pacid=42808129 polypeptide=Potri.008G113900.3.p locus=Potri.008G113900 ID=Potri.008G113900.3.v4.1 annot-version=v4.1 ATGGGTTTCATGGAATACGTGAAATCAATAGAATGGGAACATGAATCTTATCCAGGTTATGAAGATTGCATTGTCCTTCCTCTTTTTGCTCTCTTTTTCC CCTTTGTTCGATTCTTTCTTGACAGATTTGTCTTCCAGAAAGTAGCACAAGACTTGATTTTTGGAAAGGAGCATCAGACGCTGGATGTTCAATCAGATGA GAGAAGGAAGAAGATAAGAAAATTCAAGGAGTCAGCTTGGAAATGCATATATTTTCTTTCATCTGAAATTCTTGTTTTGTGTGTTACTTATGATGAGCCT TGGTTAGTTAATACAAAATATTTTTGGGTAGGGCCAGGAAGCCAGGCCTGGCCAGACCAAAAAATGAAGTTAAAATTGAAAGCAGTATATATGTATGCTG CTGGATTTTATACTTACTCCATATTTGCTCTGATTTTTTGGGAGACAAGGCGCTCGGATTTTGGTGTGTCTATGAGTCATCATGTCGCCACTGTCATTCT TATTGTGCTGTCCTACATATTAAGGTTTGGCCGTGTTGGCTCAGTTGTTTTAGCTATTCATGATGCTAGTGATGTATTTTTGGAGGTGGGAAAGATGTCC AAATACAGCGGCGCAGAAGGGGTTGCTAGCTTTGCATTTATTCTTTTTGTTTTGTCTTGGATCTTGCTGCGGCTCATTTACTATCCATTCTGGGTGCTTT GGAGTACAAGCTATGAAGTTCTCCTGATCTTGGACAAGGAAAAACACCCGGTGGATGGTCCAATCTATTATTATGTGTTCAATACTCTCCTTTACTGCTT ACTTTTTCTTCATGTATATTGGTGGGTCTTGATATATCAGATGCTTGCTAAGCAAATCCAAGCAAGGGGTCATCTTAGTGATGATGTTCGATCTGATTCT GAGGGCGAAGATGAACATGAAGATTGA
AA sequence Show only first row Show all	>Potri.008G113900.3 pacid=42808129 polypeptide=Potri.008G113900.3.p locus=Potri.008G113900 ID=Potri.008G113900.3.v4.1 annot-version=v4.1 MGFMEYVKSIEWEHESYPGYEDCIVLPLFALFFPFVRFFLDRFVFQKVAQDLIFGKEHQTLDVQSDERRKKIRKFKESAWKCIYFLSSEILVLCVTYDEP WLVNTKYFWVGPGSQAWPDQKMKLKLKAVYMYAAGFYTYSIFALIFWETRRSDFGVSMSHHVATVILIVLSYILRFGRVGSVVLAIHDASDVFLEVGKMS KYSGAEGVASFAFILFVLSWILLRLIYYPFWVLWSTSYEVLLILDKEKHPVDGPIYYYVFNTLLYCLLFLHVYWWVLIYQMLAKQIQARGHLSDDVRSDS EGEDEHED

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G13580		LOH3, LAG13	LAG One Homologue 3, LAG1 long...		Potri.008G113900 [exp]	0	1
AT3G48880			RNI-like superfamily protein (...		Potri.012G106700 [exp]	1.00	0.8863
AT5G40270			HD domain-containing metal-dep...		Potri.009G147750 [exp]	3.74	0.8743
AT4G22330		ATCES1	Alkaline phytoceramidase (aPHC...		Potri.011G023401 [exp]	6.00	0.8532
AT5G47540			Mo25 family protein (.1)		Potri.016G011300 [exp]	11.74	0.8471
AT1G34270			Exostosin family protein (.1)		Potri.019G086800 [exp]	12.36	0.8136
AT2G23790			Protein of unknown function (D...		Potri.007G031400 [exp]	13.41	0.8514
AT3G28610			P-loop containing nucleoside t...		Potri.012G072300 [exp]	13.96	0.8157
AT1G10330			Tetratricopeptide repeat (TPR)...		Potri.018G003300 [exp]	15.16	0.8226
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Potri.001G129400 [exp]	19.44	0.8284	CYP89A27P
AT5G10050			NAD(P)-binding Rossmann-fold s...		Potri.007G086600 [exp]	19.89	0.7792

Compare expression of checked genes

Potri.008G113900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.