Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68750 1514 / 0 ATPPC4 phosphoenolpyruvate carboxylase 4 (.1) AT1G53310 477 / 6e-152 ATPEPC1, ATPPC1 PEP\(PHOSPHOENOLPYRUVATE\) CARBOXYLASE 1, phosphoenolpyruvate carboxylase 1 (.1.2.3) AT2G42600 476 / 1e-151 ATPPC2 phosphoenolpyruvate carboxylase 2 (.1.2) AT3G14940 472 / 4e-150 ATPPC3 phosphoenolpyruvate carboxylase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G131800 [exp] 1843 / 0 AT1G68750 1536 / 0.0 phosphoenolpyruvate carboxylase 4 (.1) Potri.011G110700 [exp] 475 / 3e-151 AT3G14940 1766 / 0.0 phosphoenolpyruvate carboxylase 3 (.1) Potri.001G391900 [exp] 471 / 2e-149 AT3G14940 1776 / 0.0 phosphoenolpyruvate carboxylase 3 (.1) Potri.002G214100 [exp] 468 / 3e-148 AT1G53310 1699 / 0.0 PEP\(PHOSPHOENOLPYRUVATE\) CARBOXYLASE 1, phosphoenolpyruvate carboxylase 1 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035050 [exp] 1587 / 0 AT1G68750 1560 / 0.0 phosphoenolpyruvate carboxylase 4 (.1) Lus10017886 [exp] 1573 / 0 AT1G68750 1566 / 0.0 phosphoenolpyruvate carboxylase 4 (.1) Lus10017653 [exp] 476 / 2e-151 AT1G53310 1725 / 0.0 PEP\(PHOSPHOENOLPYRUVATE\) CARBOXYLASE 1, phosphoenolpyruvate carboxylase 1 (.1.2.3) Lus10033610 [exp] 474 / 1e-150 AT1G53310 1722 / 0.0 PEP\(PHOSPHOENOLPYRUVATE\) CARBOXYLASE 1, phosphoenolpyruvate carboxylase 1 (.1.2.3) Lus10020701 [exp] 474 / 2e-150 AT1G53310 1714 / 0.0 PEP\(PHOSPHOENOLPYRUVATE\) CARBOXYLASE 1, phosphoenolpyruvate carboxylase 1 (.1.2.3) Lus10029837 [exp] 473 / 4e-150 AT2G42600 1719 / 0.0 phosphoenolpyruvate carboxylase 2 (.1.2) Lus10000065 [exp] 128 / 2e-33 AT3G14940 364 / 9e-121 phosphoenolpyruvate carboxylase 3 (.1) Lus10017651 [exp] 75 / 2e-15 AT1G53310 273 / 8e-87 PEP\(PHOSPHOENOLPYRUVATE\) CARBOXYLASE 1, phosphoenolpyruvate carboxylase 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0151 [poplar] [flax] PK_TIM PF00311 [poplar] [flax] PEPcase Phosphoenolpyruvate carboxylase
Representative CDS sequence Show only first row Show all	>Potri.008G114200.1 pacid=42805986 polypeptide=Potri.008G114200.1.p locus=Potri.008G114200 ID=Potri.008G114200.1.v4.1 annot-version=v4.1 ATGACGGACACAACAGATGATATAGCAGAGGAAATCTCCTTTCAAGGCTTTGATGATTACTGCAAACTGCTTAAGAATTTATTAAACGATGTGTTGCAGA GAGAAGTTGGTACTGATTTCGTCGAGAAACTTGAACGCAATCGCACTCTCGCTCAGAGTGCTTGTAATTTGAGATTGGCGGGGATAGAAGACACAGCTGA GTTGCTGGAGAAGCAGCTGGCATCAGAGATATCAAAGATGACATTAGAGGAAGCATTGACACTTGCTCGTGCTTTCAGCCATTATCTTAATTTGATGGGA ATTGCTGAGACCCATCACAGGGTACGTAAGACACGGGATTTGGCGCATCTATCAAAATCTTGTGATGAAGTCTTTAATCAGCTGTTGCAGGGTGGAACAT CGGCTGACGAACTTTATGACTCTGTTTGCAAGCAGGAGGTTGAAATCGTTCTTACTGCACATCCTACTCAAATTAATCGTCGTACCTTGCAATATAAGCA CGTTAGAATTGCTCATCTTTTAGATTACAACGATCGACCTGATCTTACACAGGAAGATAGAGAAATGCTTATCGAAGATCTGGTAAGAGAGATTACTTCA ATATGGCAGACAGACGAGCTTAGGCGCCACAAACCCACGCCAGCAGATGAAGCCAGGTCTGGCTTGCACATTGTGGAGCAGTCTCTATGGAAAGCAGTAC CTCATTATTTACGTCGTGTCAGCACTGCGCTGAAGAAGCATACAGGAAAGCCACTTCCATTAACCTGCACGCCAATAAAGTTTGGGTCTTGGATGGGGGG TGATAGAGATGGAAATCCAAATGTAACAGCAAAGGTCACACGAGATGTCTCTCTTTTATCAAGGTGGATGGCTATTGACCTTTACATTAGAGAAGCTGAT AGTCTCAGATTTGAACTATCCATGTCTCGCTGCAGTGATAAGTTGTCAAGAGAGGCACATGACATTCTAGAACAAGAAACTTCTCCAGAGGATCGGCATG AGGGTTGGAATCAACTGATGAGCAGAAACCAAACAAAGCATCATGGCCAACAAACTCCATCACTTCCTACGCAACTTCCAGCTACAGCTGATCTTCCCTC CTGCACTGAATGTGGCAATAATGGTGGATCACAGTATCCCAAACTACAACTTCCAGGGACTGATTACTTGCCGTTGAATTGTCAGGATGTTCAGGATTCT TCAAACTCAGAATCTTCATTCCAAGATTCTAGCCATGGCTGTTGCAAATCAATTACAAATGGAAGTACTGCTAATTCTGACAGCCATCAATCAGCTCCAA GCCCACGAGGATCTTTCACCTCCAGTCAACTCCTTGCTCAGAGAAAACTTCTCGCGGAATCTAAGATAGTAAGATCCAGCTTCCAGAAGCTTCTAGAGCC AAGTCTGCCTCAACGTCCTGGAATCGCTCCTTATAGAATTGTTCTTGGTCATGTGAAAGATAAGCTTACGAAGACTAGAAGACGGCTGGAACTTCTTCTC GAGGATCTTCCCTGTGAATATGAGCCTTGGGATTACTATGAGACAACAGACCAATTGTTAGAACCACTGCTTCTATGCTACGAGTCTCTGCAATCTTGTG GAGCTGGGGTGCTAGCAGATGGCAGGCTGGCTGACCTGATAAGAAGAGTTGCGACTTTTGGAATGGTATTAATGAAGCTTGACTTGCGACAGGAATCTGG TAGACATTCTGAAGCACTGGATGCAATCACCAAATATTTGGATATGGGAACGTATAGTGAGTGGGATGAAGAAAAGAAACTGGAATTCCTAACAAGAGAG CTCAAAAGCAAGAGGCCACTAGTTCCTTCCACCATCCAGGTCACTCCTGATGTCAAAGAAGTTTTGGATACATTCCGCGTTGCTGCTGAGCTAGGGAGTG ATTCGCTTGGAGCATATGTGATCTCTATGGCATCCAATGCCAGCGATGTCCTTGCTGTGGAGCTTTTACAAAAAGATGCCCGTCTTGCTGTTAGTGGTGA GCTAGGGAAACCATGTCCTGGAGGAACGCTGCGGGTGGTTCCTTTGTTTGAAACTGTGAAAGATCTTAGAGGGGCTGGTTTGGTTATCAGGAAATTATTA TCAATTGATTGGTACTCAGAGCACATTATAAAGAACCATAGCGGGCATCAGGAGGTGATGGTTGGATATTCTGATTCTGGTAAAGATGCTGGACGCTTCA CTGCTGCATGGGAACTTTACAAAGCCCAAGAGGATGTTGTGGCAGCATGCAAAGATAATCAGATTAAAGTAACTCTATTCCATGGACGAGGAGGGAGTAT TGGCCGTGGTGGTGGACCAACATATCTTGCCATTCAATCCCAGCCACCAGGTTCAGTAATGGGTACTCTTAGGTCTACTGAGCAAGGAGAAATGGTGCAA GCCAAATTTGGGCTGCCACACACGGCTGTCAGACAGTTGGAGATATACACAACTGCAGTTCTACTTGCAACGTTAAAACCCCCAGAACGACCTCGAGAAG AAAAATGGCGTAATCTCATGGACGAGATTTCAAAAATCAGCTGCCAAAGTTACCGGAGCACGGTATATGAAAACCCAGAGTTTCTTGCCTACTTTCATGA GGCTACTCCACAAGCGGAGCTTGGTTTCCTTAACATAGGAAGCCGACCCACAAGAAGAAAGAGCTCAACGGGAATTGGACATCTTCGTGCCATTCCATGG GTATTTGCCTGGACCCAAACAAGATTTGTTCTTCCAGCATGGCTTGGAGTTGGGGCAGGTTTGAAGGGTGTTTGTGAGAAGGGACACACCCAAGATTTGA AAGCAATGTACAAAGAATGGCCTTTCTTCCAATCTACTATAGATCTTATAGAGATGGTTTTGGGGAAGGCAGACGTTCCTATAGCGAAGCACTACGATGA AGTCCTTGTATCTGATAAGAGCAGGAGAGAACTTGGTGCTGCACTAAGAAGAGAACTCTTAACAACGGAGAAGTTTGTATTGGTGGTTAGTGGGCATGAG AGGCTATCAGAAAACAACCGGAGCTTGAGGAGGCTCATTGAGAGCAGGCTCCCTTATCTCAATCCAATTAATATGTTGCAGGTTGAGATTCTAAAGAGGT TGAGAAGCGATGATGACAATCATAAACTCAGAGATGCACTGCTTATTACTATAAATGGTATTGCTGCTGGTATGAGGAACACGGGCTGA
AA sequence Show only first row Show all	>Potri.008G114200.1 pacid=42805986 polypeptide=Potri.008G114200.1.p locus=Potri.008G114200 ID=Potri.008G114200.1.v4.1 annot-version=v4.1 MTDTTDDIAEEISFQGFDDYCKLLKNLLNDVLQREVGTDFVEKLERNRTLAQSACNLRLAGIEDTAELLEKQLASEISKMTLEEALTLARAFSHYLNLMG IAETHHRVRKTRDLAHLSKSCDEVFNQLLQGGTSADELYDSVCKQEVEIVLTAHPTQINRRTLQYKHVRIAHLLDYNDRPDLTQEDREMLIEDLVREITS IWQTDELRRHKPTPADEARSGLHIVEQSLWKAVPHYLRRVSTALKKHTGKPLPLTCTPIKFGSWMGGDRDGNPNVTAKVTRDVSLLSRWMAIDLYIREAD SLRFELSMSRCSDKLSREAHDILEQETSPEDRHEGWNQLMSRNQTKHHGQQTPSLPTQLPATADLPSCTECGNNGGSQYPKLQLPGTDYLPLNCQDVQDS SNSESSFQDSSHGCCKSITNGSTANSDSHQSAPSPRGSFTSSQLLAQRKLLAESKIVRSSFQKLLEPSLPQRPGIAPYRIVLGHVKDKLTKTRRRLELLL EDLPCEYEPWDYYETTDQLLEPLLLCYESLQSCGAGVLADGRLADLIRRVATFGMVLMKLDLRQESGRHSEALDAITKYLDMGTYSEWDEEKKLEFLTRE LKSKRPLVPSTIQVTPDVKEVLDTFRVAAELGSDSLGAYVISMASNASDVLAVELLQKDARLAVSGELGKPCPGGTLRVVPLFETVKDLRGAGLVIRKLL SIDWYSEHIIKNHSGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACKDNQIKVTLFHGRGGSIGRGGGPTYLAIQSQPPGSVMGTLRSTEQGEMVQ AKFGLPHTAVRQLEIYTTAVLLATLKPPERPREEKWRNLMDEISKISCQSYRSTVYENPEFLAYFHEATPQAELGFLNIGSRPTRRKSSTGIGHLRAIPW VFAWTQTRFVLPAWLGVGAGLKGVCEKGHTQDLKAMYKEWPFFQSTIDLIEMVLGKADVPIAKHYDEVLVSDKSRRELGAALRRELLTTEKFVLVVSGHE RLSENNRSLRRLIESRLPYLNPINMLQVEILKRLRSDDDNHKLRDALLITINGIAAGMRNTG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G68750		ATPPC4	phosphoenolpyruvate carboxylas...		Potri.008G114200 [exp]	0	1
AT4G10180		FUS2, DET1, ATD...	FUSCA 2, DE-ETIOLATED 1, light...		Potri.013G161700 [exp]	8.36	0.7934	Pt-DET1.1
AT5G66760		SDH1-1	succinate dehydrogenase 1-1 (....		Potri.005G123900 [exp]	8.83	0.7022
AT2G28070		ABCG3	ATP-binding cassette G3, ABC-2...		Potri.009G008200 [exp]	13.41	0.6996
AT2G42620		PPS, PP2, ORE9,...	PLEIOTROPIC PHOTOSIGNALING, OR...		Potri.011G066700 [exp]	13.63	0.7259
AT5G45030			Trypsin family protein (.1.2)		Potri.015G121400 [exp]	16.27	0.7193
AT3G54440			glycoside hydrolase family 2 p...		Potri.003G196500 [exp]	28.24	0.7169
AT5G07900			Mitochondrial transcription te...		Potri.001G034600 [exp]	28.63	0.7257
AT3G45880			2-oxoglutarate (2OG) and Fe(II...		Potri.001G233200 [exp]	30.03	0.7085
AT5G10320			unknown protein		Potri.005G073600 [exp]	30.19	0.6654
AT4G39870			TLD-domain containing nucleola...		Potri.005G075800 [exp]	38.47	0.6906

Compare expression of checked genes

Potri.008G114200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.