Plant FIBer expression Database

Potri.008G114300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G68760 196 / 1e-65 ATNUDX1, ATNUDT1 NUDIX HYDROLASE 1, ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 1, nudix hydrolase 1 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G114400
[exp]
179 / 1e-57 AT1G68760 177 / 1e-56 NUDIX HYDROLASE 1, ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 1, nudix hydrolase 1 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10033325
[exp]
209 / 7e-71 AT1G68760 201 / 1e-67 NUDIX HYDROLASE 1, ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 1, nudix hydrolase 1 (.1)
Lus10034784
[exp]
207 / 9e-70 AT1G68760 198 / 2e-66 NUDIX HYDROLASE 1, ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 1, nudix hydrolase 1 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0261 NUDIX PF00293 NUDIX NUDIX domain
Representative CDS sequence
>Potri.008G114300.1 pacid=42808625 polypeptide=Potri.008G114300.1.p locus=Potri.008G114300 ID=Potri.008G114300.1.v4.1 annot-version=v4.1
ATGGAACAAAACGCAGCGAAACCACCGGCGCCTAGAGTGGCCGTGGTATTGTTCTTGTTGAAGGACGAATCCGTCTTGCTGGGGCGGCGCTGTTCCTCCG
TCGGTGACTCCACGTTCGCCCTGCCCGGTGGCCACCTAGAGTTCGGGGAAAGTTTCGAGGAGTGTGCGGCAAGGGAATTGAAGGAGGAAACGGGTCTGGA
GATTAACAAAACGGAGCTCCTAACAGTTACAAATAATGTCTTTCTCGAGGAACCAAAGCCGTGCCACTATGTTACTGTTTTTCTTCGAGCAAATTTGGCC
GATCCAGAGCAGGTGCCGCAAAATCTCGAGCCTGAGAAATGTTATGGTTGGGATTGGTATGCTTGGGATAATCTGCCAAACCCGTTGTTTTTGCCCTTGG
AGAAGATGGTAAAAAGTGGGTTCAACCCATTTCCAGATCACTAG
AA sequence
>Potri.008G114300.1 pacid=42808625 polypeptide=Potri.008G114300.1.p locus=Potri.008G114300 ID=Potri.008G114300.1.v4.1 annot-version=v4.1
MEQNAAKPPAPRVAVVLFLLKDESVLLGRRCSSVGDSTFALPGGHLEFGESFEECAARELKEETGLEINKTELLTVTNNVFLEEPKPCHYVTVFLRANLA
DPEQVPQNLEPEKCYGWDWYAWDNLPNPLFLPLEKMVKSGFNPFPDH

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G68760 ATNUDX1, ATNUDT... NUDIX HYDROLASE 1, ARABIDOPSIS... Potri.008G114300
[exp]
0 1
AT2G23090 Uncharacterised protein family... Potri.002G120100
[exp]
1.00 0.8495
AT5G19440 NAD(P)-binding Rossmann-fold s... Potri.009G057600
[exp]
2.00 0.8188 CCRL2,CCR.9
AT4G14300 RNA-binding (RRM/RBD/RNP motif... Potri.002G258600
[exp]
2.00 0.8012
AT3G54790 ARM repeat superfamily protein... Potri.005G225400
[exp]
2.44 0.7698
AT2G34750 RNA polymerase I specific tran... Potri.005G098500
[exp]
4.47 0.7847
AT1G28510 Optic atrophy 3 protein (OPA3)... Potri.011G059800
[exp]
5.74 0.7536
AT1G55790 Domain of unknown function (DU... Potri.006G002700
[exp]
6.92 0.8070
AT5G08380 ATAGAL1 alpha-galactosidase 1 (.1) Potri.010G255200
[exp]
9.48 0.7575
AT4G39235 unknown protein Potri.002G057100
[exp]
9.79 0.7338
AT3G60190 ADL1E, ADL4, AD... ENHANCED DISEASE RESISTANCE 3,... Potri.014G043600
[exp]
12.48 0.6743 Pt-ADL4.1

Potri.008G114300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.