Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68760 177 / 8e-57 ATNUDX1, ATNUDT1 NUDIX HYDROLASE 1, ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 1, nudix hydrolase 1 (.1) AT4G25434 40 / 0.0006 ATNUDT10 nudix hydrolase homolog 10 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G114300 [exp] 169 / 8e-54 AT1G68760 196 / 1e-65 NUDIX HYDROLASE 1, ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 1, nudix hydrolase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033325 [exp] 161 / 1e-50 AT1G68760 201 / 1e-67 NUDIX HYDROLASE 1, ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 1, nudix hydrolase 1 (.1) Lus10034784 [exp] 160 / 5e-50 AT1G68760 198 / 2e-66 NUDIX HYDROLASE 1, ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 1, nudix hydrolase 1 (.1) Lus10038780 [exp] 42 / 0.0002 AT5G47650 345 / 1e-118 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Lus10039079 [exp] 41 / 0.0003 AT5G47650 345 / 3e-119 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Lus10012319 [exp] 40 / 0.0008 AT5G47650 310 / 4e-106 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0261 [poplar] [flax] NUDIX PF00293 [poplar] [flax] NUDIX NUDIX domain
Representative CDS sequence Show only first row Show all	>Potri.008G114400.1 pacid=42807321 polypeptide=Potri.008G114400.1.p locus=Potri.008G114400 ID=Potri.008G114400.1.v4.1 annot-version=v4.1 ATGGCCTCCATTTTCCATGGGCTGGGGGGTCAAAGATCCTTAACAACATCAAACAAGTTTCAGTTCCCATCTTGCAAAACCCTGTCAGCTGGTTCTGCAC TATCCTTTTCTCAATTGTCTTCAATACTTCATCCTCCAACAAGCTTTGGTGACCGAAATATTTTCAAGAAACAAGTGAACGGAGAAAGCAAGAGGGTCGG TCATTTGAGACCTGTAATTTGCGGCGTGGAAAAGGAGGCTGGACGTGTGGAGGCACCAGTGCCAAGAGTTGGGGTAGTGGTGTTCGTTTTGAAGGGAAAA TCTGTGCTCTTGGGCTGGCGGCGCGCCACCATTTGCAACTCTGCTTTCGCTCTCCCTGGTGGCCACCTCGAGTTTGGTGAGAGCTTTGAAGCTTGTGCTG CAAGAGAAGTGAAGGAGGAAACGGGTCTGGACATTGACAACATAGAGGTCCTTAAAGTTACCAACAACCTCTTCCATGAGGGAGCAGAGCCATCCCATTA TATTATGATCCTTTTGCGAGCAGTCCTGGCCAATCCTAACCAGCTGCCTCAAAATCTCGAGCCTGACAAGTGTGATGGCTGGGATTGGTACGAGTGGGAC AGCCTCCCAAGGCCATTGTTTTGGCCATTAGAAAAGCTGTTGCAAGATGGCTTCCATCCATTTCTGATCGTGTAG
AA sequence Show only first row Show all	>Potri.008G114400.1 pacid=42807321 polypeptide=Potri.008G114400.1.p locus=Potri.008G114400 ID=Potri.008G114400.1.v4.1 annot-version=v4.1 MASIFHGLGGQRSLTTSNKFQFPSCKTLSAGSALSFSQLSSILHPPTSFGDRNIFKKQVNGESKRVGHLRPVICGVEKEAGRVEAPVPRVGVVVFVLKGK SVLLGWRRATICNSAFALPGGHLEFGESFEACAAREVKEETGLDIDNIEVLKVTNNLFHEGAEPSHYIMILLRAVLANPNQLPQNLEPDKCDGWDWYEWD SLPRPLFWPLEKLLQDGFHPFLIV

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G68760		ATNUDX1, ATNUDT...	NUDIX HYDROLASE 1, ARABIDOPSIS...		Potri.008G114400 [exp]	0	1
AT1G31910			GHMP kinase family protein (.1...		Potri.003G098100 [exp]	3.46	0.7016
AT4G16146			cAMP-regulated phosphoprotein ...		Potri.008G108201 [exp]	7.74	0.7794
AT3G22890		APS1	ATP sulfurylase 1 (.1)		Potri.010G081200 [exp]	10.39	0.7162
AT4G21390		B120	S-locus lectin protein kinase ...		Potri.004G027900 [exp]	13.49	0.7648
AT3G47090			Leucine-rich repeat protein ki...		Potri.005G030555 [exp]	16.24	0.7230
AT1G64200		VHA-E3	vacuolar H+-ATPase subunit E i...		Potri.016G139800 [exp]	18.11	0.7399
AT2G37040		PAL1, ATPAL1	PHE ammonia lyase 1 (.1)		Potri.006G126800 [exp]	21.33	0.7250	PAL3,Pt-PAL1.2
AT3G05290		AtPNC1, PNC1	peroxisomal adenine nucleotide...		Potri.005G033800 [exp]	25.84	0.5719
					Potri.011G033200 [exp]	26.11	0.7044
AT1G11750		NCLPP6, NCLPP1,...	NUCLEAR-ENCODED CLPP 1, CLP pr...		Potri.009G114001 [exp]	30.65	0.7334

Compare expression of checked genes

Potri.008G114400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.