Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68780 387 / 1e-131 RNI-like superfamily protein (.1) AT1G13230 381 / 4e-129 Leucine-rich repeat (LRR) family protein (.1) AT3G25670 376 / 2e-126 Leucine-rich repeat (LRR) family protein (.1) AT4G28560 118 / 8e-29 RIC7 ROP-interactive CRIB motif-containing protein 7 (.1) AT1G80080 108 / 2e-25 AtRLP17, TMM TOO MANY MOUTHS, Receptor Like Protein 17, Leucine-rich repeat (LRR) family protein (.1) AT2G42800 103 / 1e-23 AtRLP29 receptor like protein 29 (.1) AT1G71400 86 / 1e-17 AtRLP12 receptor like protein 12 (.1) AT2G15080 83 / 1e-16 AtRLP19 receptor like protein 19 (.1.2) AT3G05370 80 / 1e-15 AtRLP31 receptor like protein 31 (.1) AT4G20140 80 / 1e-15 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G202100 [exp] 121 / 1e-29 AT1G80080 597 / 0.0 TOO MANY MOUTHS, Receptor Like Protein 17, Leucine-rich repeat (LRR) family protein (.1) Potri.008G211800 [exp] 102 / 2e-23 AT2G42800 474 / 7e-166 receptor like protein 29 (.1) Potri.005G227600 [exp] 89 / 1e-18 AT4G28560 444 / 2e-153 ROP-interactive CRIB motif-containing protein 7 (.1) Potri.010G058200 [exp] 77 / 1e-14 AT1G67510 989 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G007600 [exp] 77 / 1e-14 AT1G73080 981 / 0.0 PEP1 receptor 1 (.1) Potri.007G001000 [exp] 76 / 2e-14 AT5G23400 642 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.012G009200 [exp] 76 / 2e-14 AT1G45616 386 / 7e-118 receptor like protein 6 (.1) Potri.018G045500 [exp] 76 / 3e-14 AT2G25790 925 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.017G152500 [exp] 75 / 6e-14 AT3G47570 753 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034384 [exp] 456 / 2e-158 AT1G13230 455 / 5e-159 Leucine-rich repeat (LRR) family protein (.1) Lus10034261 [exp] 455 / 3e-158 AT1G13230 460 / 6e-161 Leucine-rich repeat (LRR) family protein (.1) Lus10038948 [exp] 359 / 3e-120 AT1G68780 404 / 2e-138 RNI-like superfamily protein (.1) Lus10027239 [exp] 358 / 5e-120 AT3G25670 402 / 6e-138 Leucine-rich repeat (LRR) family protein (.1) Lus10042458 [exp] 116 / 1e-28 AT1G80080 467 / 3e-163 TOO MANY MOUTHS, Receptor Like Protein 17, Leucine-rich repeat (LRR) family protein (.1) Lus10010946 [exp] 113 / 8e-27 AT2G42800 459 / 2e-159 receptor like protein 29 (.1) Lus10031383 [exp] 113 / 2e-26 AT2G42800 446 / 1e-152 receptor like protein 29 (.1) Lus10026208 [exp] 110 / 4e-26 AT1G80080 500 / 2e-175 TOO MANY MOUTHS, Receptor Like Protein 17, Leucine-rich repeat (LRR) family protein (.1) Lus10003624 [exp] 104 / 6e-24 AT4G28560 441 / 2e-152 ROP-interactive CRIB motif-containing protein 7 (.1) Lus10008242 [exp] 88 / 1e-18 AT4G28560 395 / 8e-135 ROP-interactive CRIB motif-containing protein 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.008G114700.1 pacid=42807254 polypeptide=Potri.008G114700.1.p locus=Potri.008G114700 ID=Potri.008G114700.1.v4.1 annot-version=v4.1 ATGATGAAGACTTTTAACATAAACAGTCGTGTCATTTTGGTCCTATGCATAATGAGTTTAGGTGTTTGGTGCTATGGGGAAGACGATTATAATGATGCAG TTCCAATGGAGGAAGGTGAGAAGACAGCTCTATACTCTGCCATTCAAGGCTTTGTAGGTAATTGGTGGAATGGCTCAGATCTCTATCCAGATCCTTGTGG GTGGACTCCTGTTCAGGGAGTCTCCTGTGATCTATTTGATGGGCTTTGGTATGTCACTGCTTTAAGCATTGGACCCATTCTGGACAATTATCTTGATTGT GCTCCAATTGTGGAGTTTAGACCACAATTGTTTGAGCTCAAGCACCTAAAGTCTCTAACTTTCTTCAGTTGCTTTGTGTCTCCCCACGAACATCCAATCA TTATCCCTAGCAAGAACTGGGAAAAACTTGCTGGCGACTTGGAAACATTAGAGTTTCGATCAAACCCTGGTCTCATTGGAAAAGTTCCATCAAGCTTTGG TAGCCTAATTAGGCTCCAGTCTTTAGTACTACTAGAAAATGGATTGACTGGTGAATTACCAAGAAATGTTGGTAACTTGACCAAGTTGAAGAGGCTAGTC CTTGCTGCAAACTGGTTTTATGGGAGGATTCCAGATAATTTCGGTGGGTTAAATGAGCTATTAATCTTGGATTTAAGTAGGAATTTACTATCTGGGTCTC TGCCTTTGACTCTTGGGGGTCTCAATTCACTTCTAAAACTTGATTTGAGCAACAATCAGCTTGTAGGCAGCCTGCCAACAGTGATGTGTTACATGAAGAA TTTGACACTTTTAGACCTGAGAAACAACAGGTTTTCTGGTGGATTGACCAAGTCACTGCAAGAGATGTATTCTTTGGAAGAAATGGCCTTGTCTAACAAC CCGATTGGAGGAGACCTTCAGGGCCTAGAGTGGCATAGCCTACAGAATTTGGTGGTCCTGGACCTCTCCAATATGGGCTTAACAGGTGAGATTCCCGAGT CCATTGCTGAATTGAAGAGGCTGAGATTTTTGGGTCTTAGAGGCAACAGGCTCACAGGAAATCTCTCCCCAAAGCTAGCAACTTTGCCATGTGTTAGTGC ACTCTATCTGGATGGAAACAATCTGACAGGAGAGCTCAAGTTTTCTGGATGGTTTTATGGGAAAATGGGTAGGCGTTTTGGGGCTTGGAATAATCCAAAT CTGTGTTACCCGGTTGGGTTAATGTCAACAGGCCATGCTCCATATGGGGTGAAACCATGCCAGCAAGAGGTCTCCTTAGTTGAAGCCAGCACAAATTCCA AGTTAGGTGATGGCAATTTTAATAAGAATTCCCGTTTAATGGCCTCTTTGGGATTCCCAAGCTACGTCATTGATGGGTTTTGGAGGTTTTATTTAGTACA GGTATTTATGATGGTTCAACTGTTGAATTTGTCCCTATAG
AA sequence Show only first row Show all	>Potri.008G114700.1 pacid=42807254 polypeptide=Potri.008G114700.1.p locus=Potri.008G114700 ID=Potri.008G114700.1.v4.1 annot-version=v4.1 MMKTFNINSRVILVLCIMSLGVWCYGEDDYNDAVPMEEGEKTALYSAIQGFVGNWWNGSDLYPDPCGWTPVQGVSCDLFDGLWYVTALSIGPILDNYLDC APIVEFRPQLFELKHLKSLTFFSCFVSPHEHPIIIPSKNWEKLAGDLETLEFRSNPGLIGKVPSSFGSLIRLQSLVLLENGLTGELPRNVGNLTKLKRLV LAANWFYGRIPDNFGGLNELLILDLSRNLLSGSLPLTLGGLNSLLKLDLSNNQLVGSLPTVMCYMKNLTLLDLRNNRFSGGLTKSLQEMYSLEEMALSNN PIGGDLQGLEWHSLQNLVVLDLSNMGLTGEIPESIAELKRLRFLGLRGNRLTGNLSPKLATLPCVSALYLDGNNLTGELKFSGWFYGKMGRRFGAWNNPN LCYPVGLMSTGHAPYGVKPCQQEVSLVEASTNSKLGDGNFNKNSRLMASLGFPSYVIDGFWRFYLVQVFMMVQLLNLSL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G68780			RNI-like superfamily protein (...		Potri.008G114700 [exp]	0	1
AT3G50560			NAD(P)-binding Rossmann-fold s...		Potri.007G040900 [exp]	1.41	0.9777
AT3G61230	LIM	PLIM2c	PLIM2c, GATA type zinc finger ...		Potri.001G107100 [exp]	6.48	0.9783
AT4G26900		HISN4, HISHF, A...	HIS HF (.1)		Potri.009G061700 [exp]	9.38	0.9576	HF.2
AT4G36490		ATSFH12	SEC14-like 12 (.1)		Potri.007G020300 [exp]	14.07	0.9741	Pt-LJPLP.1
AT1G14930			Polyketide cyclase/dehydrase a...		Potri.008G131300 [exp]	17.54	0.9679
AT1G77410		BGAL16	beta-galactosidase 16 (.1)		Potri.002G080700 [exp]	18.22	0.9410
AT5G05130			DNA/RNA helicase protein (.1)		Potri.016G033700 [exp]	18.65	0.9217
					Potri.009G020201 [exp]	21.33	0.9656
AT5G67580	MYB	ATTBP3, TRB2, A...	TELOMERE-BINDING PROTEIN 3, TE...		Potri.007G005000 [exp]	23.66	0.9420	SMH905
AT5G05800			unknown protein		Potri.014G061450 [exp]	26.98	0.9656

Compare expression of checked genes

Potri.008G114700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.