Plant FIBer expression Database

Potri.008G114800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G13220 567 / 0 CRWN2, LINC2 LITTLE NUCLEI2, CROWDED NUCLEI 2, nuclear matrix constituent protein-related (.1.2)
AT1G67230 555 / 5e-178 CRWN1, LINC1 CROWDED NUCLEI 1, little nuclei1 (.1)
AT1G68790 523 / 2e-166 CRWN3, LINC3 CROWDED NUCLEI 3, little nuclei3 (.1)
AT5G65770 181 / 2e-46 CRWN4, LINC4 CROWDED NUCLEI 4, little nuclei4 (.1.2.3)
AT5G65780 167 / 5e-42 ATBCAT-5 branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5) (.1), branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5) (.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G111400
[exp]
651 / 0 AT1G67230 793 / 0.0 CROWDED NUCLEI 1, little nuclei1 (.1)
Potri.012G034300
[exp]
173 / 1e-43 AT5G65770 844 / 0.0 CROWDED NUCLEI 4, little nuclei4 (.1.2.3)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10034263
[exp]
976 / 0 AT1G13220 672 / 0.0 LITTLE NUCLEI2, CROWDED NUCLEI 2, nuclear matrix constituent protein-related (.1.2)
Lus10034383
[exp]
971 / 0 AT1G13220 680 / 0.0 LITTLE NUCLEI2, CROWDED NUCLEI 2, nuclear matrix constituent protein-related (.1.2)
Lus10003075
[exp]
518 / 6e-164 AT1G67230 805 / 0.0 CROWDED NUCLEI 1, little nuclei1 (.1)
Lus10034076
[exp]
410 / 8e-124 AT1G67230 702 / 0.0 CROWDED NUCLEI 1, little nuclei1 (.1)
Lus10003074
[exp]
398 / 4e-120 AT1G67230 681 / 0.0 CROWDED NUCLEI 1, little nuclei1 (.1)
Lus10034075
[exp]
310 / 6e-89 AT1G67230 606 / 0.0 CROWDED NUCLEI 1, little nuclei1 (.1)
Lus10019257
[exp]
144 / 2e-34 AT5G65770 835 / 0.0 CROWDED NUCLEI 4, little nuclei4 (.1.2.3)
Lus10011568
[exp]
135 / 6e-32 AT5G65770 831 / 0.0 CROWDED NUCLEI 4, little nuclei4 (.1.2.3)
PFAM info
Representative CDS sequence
>Potri.008G114800.1 pacid=42807245 polypeptide=Potri.008G114800.1.p locus=Potri.008G114800 ID=Potri.008G114800.1.v4.1 annot-version=v4.1
ATGTTTACGCCACAGAGGAGGCCGTCGCCGGCAATCACGCTAACTCCTCGGAGTGAGATGCACAGAAGTGGCGGGGCCAATGCGGGGGCCACTAGCACTG
GAATTGGGGCAAAGGGCAAGGCGTTGGCGTTAATTGACGGGGCGCTCCCGCCTCCACCGCCAGTGGGATCGCTGAGTGTGAATGCAGGGGAGCTGGATAC
GGAAGATGTGGAGGCTTGGAGGAGGTTTAGAGAGGTGGGTTTGTTGGATGAGGCTGCTATGGAGAGAAGGGACCGTGAGGCGCTTCTAGAGAAGGCATCG
AGGCTTGAAAAGGAGCTTTTTGATTATCAATATAACATGGGCCTCCTCCTTATTGAGAAAAAAGAGTGGACTTCAAAGTATGAAGAACTAAGGCAAGCAT
GGGCAGAAACTGAAGAAATTCTCAAACGTGAACAGGCAGCGCACTTAATTGCTTTATCTGAAGTTGAGAAACGACAGGAAAACTTAAGAAAAGCATTGAG
TGTTGAGAAGCAGTGTGTGGGTGAACTTGAAAAGGCTTTGCACGACTTGCAAGAGGAGCATGTTCTAATCAAGAAAGTTTCTGACTCAAAGTTGGCTGAT
GCAAAAGCTTTGGCTGCTGGAAATGAGGAGAAATCTCTGGAGGTAGAAGAAAAGATGCGCGTTGCTGAATCCAAGCTTGCTGAAGTTAACATGAAAAGCT
CAGAGCTGGATATGAAATTAAATCAGTTAGAAGCTCGTGAAAACTTGCTTCAGAGGGAGCGCCTCTCCTTTAATACAGAACGAGAAGCACACAAGGCAAC
TTTCTATAAACAGAGAGAAGACTTGCAAGAATGGGAGAAGAAACTACGTCAAGGGGAAGAGAGCTTATGTGAGCTCCGGAGGACCCTTAACCAGAGAGAG
GAAAAGGCAAGTGAAGATGAGAGGGTTCTTAAGAAGAAGGAGAGGGATCTTGAAGAGGCAGAAAAGAAGATTGATATATCATTTGCTAAGTTGAAGGAGA
GGGAAGTTGATGTAAATAATCGGCTGTTGGGCTTGGTTACAAAAGAGAAGGAAGCTGATTCTCTGAGAAGCACCCTAGAGATTAAAGAGAAGGAATTGCT
TGCTTTGGAAGACAAGCTCAGTGCTAGAGAAAGAGTGGAAGTCCAAGAGCTCCTTGATGAGCATAGGACCATTCTTGATGCTAAAATTCAGGAGGCTGAC
TTGGAATTGACAGAGAAAAGGAAGAATCTTGAAGAAGAATTGAGAAGCAAGGCTGATGGAGTGAGGCTGCTGGAAACAGAAATCTTTCACAGAGAAGAAA
AGTTGGGAAAGCGAGAGCTAGCTTTGGATAGGAAGTCTGATAGGATGAAGGATAAAGAGAAGGACCTTGATGCAAAATTGAAGGTTGTAAAGGAGAAAGA
TAAGTCTATGAAGGCTGAGCAGAAACAGTTGGAGCTGCAGAAGAAGCAATTGCTTTCTGATGAAGTAAGTGTGCAACTCCTTGAGGATGACTGCGAGAAG
CTGAGGGCCGAGATTGCTCAGCAGGAGTTGCAGATTGGGGAAGAGAGTGAAAGCATTAAAATAACTAATAACGAGAGGTTAGAATACCTTCGCTTGCAGG
CTGAACTGAAACAGGAACTAGAGAAGTGCCGGCGCCAGGCAGAGTTTCTTTTGAAAGAAGCTGAAGAGTTGGAACAGGAAAGGGAGAGGTCTGAGAAGGA
GAGGGAAGTGCTGGAAGAGAAAAGAGCTCAAATTAACAAGGAGCAGAAGGACATTGTTGAAGAGAGAGAGAGATTAGAAAAGATGAAGTATGCTGGAGGG
GAAAGCCTGAAAAAAGAGGAAAATGACATGCAGGAGTATGCTCAGAGAGAGTTGGAGGCTATTAGACTAGAGAAAGAATCGTTTGAAGCCAGAAAGAGGC
ATGAACAATTGGTTTTATCTGAAAAGGCTGAAAATGTGCACATTCAAATGGTTCAAGACTTTGAATCAGAGAGATGTAATTTTGAGACTGGCTTAATAAA
TAGGCAGGAAGAAATGGAGAAAGCACTGCGAGGAAGGGAAAGGGCGTTTGAGGTGCTGAAGGAGAGAGAACTTAACACCATTAACAACTTAAAAGAAGTT
GCACGCAGGGAAAGGGAAGAAATAGAGTCTGAAAGACGTGCAATGGACAAGGAAAGACAAGAAGTTGTAAAAAACAAGGAGAAGCTAGAAGAACAACAAT
ATGGAATTAAGAAGGACATTGATGAGCTTGGGATGCTTAGCAATAAGCTTCGGAAACAAAGAGAGCAGGTTATCAGAGAAAGAAACTACTTTCTTTCATT
TGTTGAGAAGCACAAGAGTTGCACGAATTGTGGAGATGTTACTAGGGAGTTTGTACTTTCTGATCTCCAGCCACCGGAGATGGAAGAAAGAGAGACCCTT
CCTTCACCAAAAATATCTGATGAATTTTTCAGGAATAATGAAGGTGGTGCAGATGCTTCTGATATTCTGAATATCAAGAGACCCCTCAGTGAAGATTTGG
GATCCAACTCTCAGGGACGCATGTCGTGGCTCCGCAAATGCACCTCAAAGATTTTCAGCATTTCTCCTACTAGAAAGATTCAGCATGTTTCTGCTCCAGC
ATTTGAGGGAGGGTTCCCTTCATCACCTGTGCGTGCTGATATGGAAGAAAGAGTTGAGGGATCTGCTGTGCAAAAAGCTATCACATCCAGTTCTATTCCT
GTAGATCAAGCACAAGTGTCCTTTGGTACTGCAGATGATACTGTTGACATTCAGCATCCCCAATCTGATGGAATAAAAAGAGATGCAGGTGGTGGGTATT
CTGTGTCTGTTGATGATCAAAGCTATATGGATAGTAAGACACAGGACCTGCCAGAAGATTCTGAGCTGTCAGAGCTGAAGAACAGAAGGCATAAACCTGG
GAGGAGACAGAAGTCTGGACCAGGCAGAACAAGGTCAATAAAGGCAGTGGTTGAGGATGCAAAGTTGTTTCTTGGGGAAAGCCTCAAAGAAACTGAATAT
AATTCAAGTGTTCAGCCTAATGATATTTCTCGTAACAGTGATGAAAGTCGGGGTATAAATGTTACTAAGAAATCAGACGTTGCAAGAAAGCGGCAACGTC
TACCTACAGAAAGAGAGCAGGATGCCGGTGACAGCGAAGGACACTCTGAGAGTGTCACTACTGGTGGGCGCAGGAAGAGGCAACAAATAGTGGCTCCAGA
AGAGCCTACTCCAGGGCAAAAACGATACAATCTTCGACGCCACAAGATTGCAGGCTTGACCGCAGCCACCCAAGCATCATCTGACTTGATGAAGGGCGAG
AAAACAGCTGATGGTGCTGCTGCTGTGGAACCGATTCGAAACCCAGAAACTGCTTCTGGGCTGTCACTTGGAGTCACTAGTGAGAATAACAAATCCACCG
ACGTGGTGCAGGTTACTACACTAAAAAGTGTGGAGTTATCACAGGACAAGGTGGTCAGGTTCCAAACAACAGATGTTGATTACCAAGCTGAGGCAGCGAA
ATCAGTTGGAATTACAGAGTTGAGTGAGGAAGTAAATGGGATACCAGATTTCGAGGATGAAGCTGAAAATGGCAGCACAGTGCATGAGGATGAAGATGAC
TATGATGAAGATGAGTTGCAGCATCCTGGTGAAGTTTCAATGGGAAAGAAGATCTGGACCTTCTTCACTACATAG
AA sequence
>Potri.008G114800.1 pacid=42807245 polypeptide=Potri.008G114800.1.p locus=Potri.008G114800 ID=Potri.008G114800.1.v4.1 annot-version=v4.1
MFTPQRRPSPAITLTPRSEMHRSGGANAGATSTGIGAKGKALALIDGALPPPPPVGSLSVNAGELDTEDVEAWRRFREVGLLDEAAMERRDREALLEKAS
RLEKELFDYQYNMGLLLIEKKEWTSKYEELRQAWAETEEILKREQAAHLIALSEVEKRQENLRKALSVEKQCVGELEKALHDLQEEHVLIKKVSDSKLAD
AKALAAGNEEKSLEVEEKMRVAESKLAEVNMKSSELDMKLNQLEARENLLQRERLSFNTEREAHKATFYKQREDLQEWEKKLRQGEESLCELRRTLNQRE
EKASEDERVLKKKERDLEEAEKKIDISFAKLKEREVDVNNRLLGLVTKEKEADSLRSTLEIKEKELLALEDKLSARERVEVQELLDEHRTILDAKIQEAD
LELTEKRKNLEEELRSKADGVRLLETEIFHREEKLGKRELALDRKSDRMKDKEKDLDAKLKVVKEKDKSMKAEQKQLELQKKQLLSDEVSVQLLEDDCEK
LRAEIAQQELQIGEESESIKITNNERLEYLRLQAELKQELEKCRRQAEFLLKEAEELEQERERSEKEREVLEEKRAQINKEQKDIVEERERLEKMKYAGG
ESLKKEENDMQEYAQRELEAIRLEKESFEARKRHEQLVLSEKAENVHIQMVQDFESERCNFETGLINRQEEMEKALRGRERAFEVLKERELNTINNLKEV
ARREREEIESERRAMDKERQEVVKNKEKLEEQQYGIKKDIDELGMLSNKLRKQREQVIRERNYFLSFVEKHKSCTNCGDVTREFVLSDLQPPEMEERETL
PSPKISDEFFRNNEGGADASDILNIKRPLSEDLGSNSQGRMSWLRKCTSKIFSISPTRKIQHVSAPAFEGGFPSSPVRADMEERVEGSAVQKAITSSSIP
VDQAQVSFGTADDTVDIQHPQSDGIKRDAGGGYSVSVDDQSYMDSKTQDLPEDSELSELKNRRHKPGRRQKSGPGRTRSIKAVVEDAKLFLGESLKETEY
NSSVQPNDISRNSDESRGINVTKKSDVARKRQRLPTEREQDAGDSEGHSESVTTGGRRKRQQIVAPEEPTPGQKRYNLRRHKIAGLTAATQASSDLMKGE
KTADGAAAVEPIRNPETASGLSLGVTSENNKSTDVVQVTTLKSVELSQDKVVRFQTTDVDYQAEAAKSVGITELSEEVNGIPDFEDEAENGSTVHEDEDD
YDEDELQHPGEVSMGKKIWTFFTT

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G13220 CRWN2, LINC2 LITTLE NUCLEI2, CROWDED NUCLEI... Potri.008G114800
[exp]
0 1
AT3G16620 ATTOC120 ARABIDOPSIS THALIANA TRANSLOCO... Potri.009G131200
[exp]
4.00 0.8692
AT2G16485 nucleic acid binding;zinc ion ... Potri.004G161700
[exp]
4.24 0.8891
AT3G06400 CHR11 chromatin-remodeling protein 1... Potri.010G021400
[exp]
4.47 0.8565
AT1G65440 GTB1 global transcription factor gr... Potri.006G031900
[exp]
6.00 0.8637
AT2G44710 RNA-binding (RRM/RBD/RNP motif... Potri.007G014100
[exp]
7.34 0.8540
AT3G58110 unknown protein Potri.013G119700
[exp]
9.79 0.8542
AT1G32750 GTD1, TAF1, HAF... TBP-ASSOCIATED FACTOR 1, HISTO... Potri.007G113300
[exp]
13.49 0.8549 HAF902
AT5G16780 MDF, DOT2 MERISTEM-DEFECTIVE, DEFECTIVEL... Potri.001G082100
[exp]
14.07 0.8549
AT3G12810 CHR13, SRCAP, P... PHOTOPERIOD-INDEPENDENT EARLY ... Potri.003G022100
[exp]
14.49 0.8519 CHR928,PIE1.4
AT2G33835 C3HZnF FES1 FRIGIDA-ESSENTIAL 1, Zinc fing... Potri.011G056600
[exp]
16.43 0.7771

Potri.008G114800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.