Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26110 419 / 8e-139 DCP5 decapping 5 (.1.2) AT5G45330 138 / 3e-34 DCP5-L decapping 5-like (.1) AT4G19360 86 / 4e-19 SCD6 protein-related (.1.2) AT4G19340 54 / 6e-08 SCD6 protein-related (.1) AT4G19260 55 / 7e-08 Galactose oxidase/kelch repeat superfamily protein (.1) AT4G19330 54 / 4e-07 Galactose oxidase/kelch repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G131400 [exp] 707 / 0 AT1G26110 494 / 1e-168 decapping 5 (.1.2) Potri.004G104000 [exp] 399 / 9e-132 AT1G26110 207 / 7e-59 decapping 5 (.1.2) Potri.004G235100 [exp] 272 / 3e-83 AT5G45330 229 / 7e-68 decapping 5-like (.1) Potri.017G111500 [exp] 259 / 5e-78 AT1G26110 208 / 2e-59 decapping 5 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017885 [exp] 552 / 0 AT1G26110 473 / 5e-160 decapping 5 (.1.2) Lus10035052 [exp] 534 / 0 AT5G45330 422 / 4e-140 decapping 5-like (.1) Lus10017884 [exp] 532 / 0 AT1G26110 462 / 6e-156 decapping 5 (.1.2) Lus10035051 [exp] 450 / 8e-151 AT1G26110 297 / 1e-92 decapping 5 (.1.2) Lus10034747 [exp] 134 / 4e-33 AT1G26110 229 / 5e-68 decapping 5 (.1.2) Lus10033287 [exp] 134 / 5e-33 AT1G26110 222 / 3e-65 decapping 5 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09532 [poplar] [flax] FDF FDF domain CL0527 [poplar] [flax] Sm-like PF14438 [poplar] [flax] SM-ATX Ataxin 2 SM domain
Representative CDS sequence Show only first row Show all	>Potri.008G114900.4 pacid=42807851 polypeptide=Potri.008G114900.4.p locus=Potri.008G114900 ID=Potri.008G114900.4.v4.1 annot-version=v4.1 ATGGCAGCAGGTGAGAACAGTATGAATACGGCGTCAACTTCAAGATCGAATTCGACAGCGGATTCGTATATCGGAAGCTTGATTAGCTTGACATCAAAGA GTGAGATCAGATACGAGGGTATTCTTTATAATATCAACACTGAAGAGTCCAGTATTGGATTGAAAAACGTGCGGTCGTTTGGAACAGAAGGGCGGAAAAA GGATGGTCCACAAATCCTTCCTAGTGATAAAGTTTATGAATACATATTGTTCCGTGGAAGTGACATCAAGGACTTGCAGGTTAAGTCTTCTCCACCAGTC CAGTCTTTTCCACCTATAAACAATGACCCAGCAATCATACAGTCTCATTATCCTCGCCCAGTTGCCACCTCCACCAGCTTGCCTTCTGCTGTCAGTGGGT CGTTGACTGACCTTGGATCCAACAATGGACCAGGGGGGCTCCCTGGGTCAAATTTCCAAGGTGGGCTGCCTTTATATCAACCTGGAGGGAGCTTAGGAGC ATGGGGAGTTTCACCTCCCCCCCCAAATGCAAATGGTAATGGCCTTGCAATGCCAATGTACTGGCAAAGCTACTATGGCCCCCCTAATGGGATTCCACAT TTACACCAATCTTTGCTTCGACCGCCACCTGGACTTGCAATGCCTCCTTCCATGCAGCAACCCATGCAATACCCCAATTTCAATACTTCTTTGCCCACTG GTGCCTTAAATTTAGCCAGTTCAACCTTGCCCCCTTTGAACCTGCCGGCTTCAACCTTGCCCCCTTTGAACCTGCCGGCTTCAACCTTGCCCCCATCAAA CCTGCTGGTGTCAACCTTGCCAGCTTCCTTGCCAGATGTCCCGCTTCCTCTATTTCCTGGCATCACTAGTTCCCTTAATTTCACTTCCCATTCCTCAGTG CCATCAACTTTGCCTTCAACTGTACCCTTAATACCCGCTGCTTCTCTGCCTTCTGAAACATTACCAAGTCTGATACCTAATAAGGTTACTATTTCTGCAC TTCCTACAACCAATTTAGGTGTTACTTTTCCAGTGCTATCTCCTGTGTCAACTTCCAGCTCAGATTTAAACACCATTGTACCGCCAATCTCCAACAAACC TAGTTCAATTTCTGGCCCAACAATGCCTTATCAAAGCGTGACACAATCTGCATCCTCTGCTGTTTTAGCATCCAATTCTCTTCGCACGGAAACACCAACT CCAACTCCTTCTTTGGTAACCCCTGACCAGTTATTGCAATCAGGACCAACGATAGTTCCTTCTCCTCAGCCTGTGCAAACAGCCCATAAAGATGTTGAGG TTGTTAAAGTATCACCAGCAGCAGCAGCAGCAGCACCATCACCAGAACCATCAGTGCCAGTTGCCACACAAGCGCAGCCACCCATACTCCCATTGCCTGT TCCTTCACGGGCTAGCCATAAGCCAAATGGAGCTACTTTTCATGCTCGCCATGGTTACCGTGGACGTGAAAGAGGAAGAGGATCTGGGAGCTCACGACCG GTGACAAAATTCACTGAGGATTTTGATTTTATAGCAATGAATGAGAAGTTCAAGAAGGATGAAGTTTGGGGTCATCTTGGCAAGAACAACAAATCTCATT CGAAGGATAGAGAAGATGGAAATGCCAGTGGTGAAGATGATTCTCAAGATGAAGATGAAAATGAACTAGCTAAGATTGAGGTTAAGCCTGTTTATAACAA GGATGACTTTTTTGATACCATCTCATGTAACGCGCTTGGTAATGACTCACAAAATGGAAGGACTAGATTCTCAGAGCAAATGAAATTAGACACAGAGACC TTTGGGGACTTTACAAGGTACCGGGGCGGACGAGGTGGTCGTGGTCCTCCACGTGGTGGTCGTTCTCGTGGATCTTATTACGGAAGGGGGTATGGATATG GCTATGTTGGGAGGGGCCGGGGCCGGGGCGCGCCTAATCATGTTTCTTAG
AA sequence Show only first row Show all	>Potri.008G114900.4 pacid=42807851 polypeptide=Potri.008G114900.4.p locus=Potri.008G114900 ID=Potri.008G114900.4.v4.1 annot-version=v4.1 MAAGENSMNTASTSRSNSTADSYIGSLISLTSKSEIRYEGILYNINTEESSIGLKNVRSFGTEGRKKDGPQILPSDKVYEYILFRGSDIKDLQVKSSPPV QSFPPINNDPAIIQSHYPRPVATSTSLPSAVSGSLTDLGSNNGPGGLPGSNFQGGLPLYQPGGSLGAWGVSPPPPNANGNGLAMPMYWQSYYGPPNGIPH LHQSLLRPPPGLAMPPSMQQPMQYPNFNTSLPTGALNLASSTLPPLNLPASTLPPLNLPASTLPPSNLLVSTLPASLPDVPLPLFPGITSSLNFTSHSSV PSTLPSTVPLIPAASLPSETLPSLIPNKVTISALPTTNLGVTFPVLSPVSTSSSDLNTIVPPISNKPSSISGPTMPYQSVTQSASSAVLASNSLRTETPT PTPSLVTPDQLLQSGPTIVPSPQPVQTAHKDVEVVKVSPAAAAAAPSPEPSVPVATQAQPPILPLPVPSRASHKPNGATFHARHGYRGRERGRGSGSSRP VTKFTEDFDFIAMNEKFKKDEVWGHLGKNNKSHSKDREDGNASGEDDSQDEDENELAKIEVKPVYNKDDFFDTISCNALGNDSQNGRTRFSEQMKLDTET FGDFTRYRGGRGGRGPPRGGRSRGSYYGRGYGYGYVGRGRGRGAPNHVS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G26110		DCP5	decapping 5 (.1.2)		Potri.008G114900 [exp]	0	1
AT4G09980		EMB1691	EMBRYO DEFECTIVE 1691, Methylt...		Potri.015G147200 [exp]	2.82	0.9028
AT1G55540		EMB1011	Nuclear pore complex protein (...		Potri.003G223400 [exp]	5.29	0.8891
AT3G56720			unknown protein		Potri.006G039900 [exp]	6.40	0.8123
AT1G17440		CKH1, TAF12b, E...	TBP-ASSOCIATED FACTOR 12B, ENH...		Potri.003G064100 [exp]	8.48	0.8573
AT3G12250	bZIP	BZIP45, TGA6	TGACG motif-binding factor 6 (...		Potri.003G194600 [exp]	9.59	0.8255
AT4G31160		DCAF1	DDB1-CUL4 associated factor 1 ...		Potri.006G280200 [exp]	12.64	0.8647
AT4G16280		FCA	RNA binding;abscisic acid bind...		Potri.010G147900 [exp]	12.72	0.8648
AT3G57300		ATINO80	INO80 ortholog (.1.2)		Potri.016G043500 [exp]	12.96	0.8548	CHR929
AT1G80070		EMB33, EMB177, ...	ABNORMAL SUSPENSOR 2, EMBRYO D...		Potri.003G031900 [exp]	15.49	0.8638	Pt-EMB177.4
AT2G30800		ATVT-1, HVT1	helicase in vascular tissue an...		Potri.005G206500 [exp]	16.30	0.8339	HVT1.2

Compare expression of checked genes

Potri.008G114900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.