Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21550 212 / 2e-70 AtDMP2 Arabidopsis thaliana DUF679 domain membrane protein 2, DUF679 domain membrane protein 2 (.1) AT3G21520 167 / 2e-52 AtDMP1 Arabidopsis thaliana DUF679 domain membrane protein 1, DUF679 domain membrane protein 1 (.1) AT4G18425 134 / 2e-39 Protein of unknown function (DUF679) (.1) AT5G46090 132 / 6e-39 Protein of unknown function (DUF679) (.1) AT4G24310 118 / 2e-33 Protein of unknown function (DUF679) (.1) AT3G02430 115 / 4e-32 Protein of unknown function (DUF679) (.1) AT1G09157 97 / 1e-24 Protein of unknown function (DUF679) (.1) AT5G39650 95 / 6e-24 DAU2 DUO1-activated unknown 2, Protein of unknown function (DUF679) (.1) AT5G27370 90 / 1e-22 Protein of unknown function (DUF679) (.1) AT4G28485 66 / 1e-13 AtDMP7 Arabidopsis thaliana DUF679 domain membrane protein 7, DUF679 domain membrane protein 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G027600 [exp] 300 / 3e-105 AT3G21550 202 / 1e-66 Arabidopsis thaliana DUF679 domain membrane protein 2, DUF679 domain membrane protein 2 (.1) Potri.017G016300 [exp] 144 / 1e-43 AT4G18425 203 / 2e-66 Protein of unknown function (DUF679) (.1) Potri.004G049000 [exp] 139 / 4e-41 AT4G18425 276 / 6e-95 Protein of unknown function (DUF679) (.1) Potri.011G058000 [exp] 137 / 5e-41 AT4G18425 247 / 8e-84 Protein of unknown function (DUF679) (.1) Potri.003G008600 [exp] 118 / 4e-33 AT3G02430 185 / 6e-59 Protein of unknown function (DUF679) (.1) Potri.013G027200 [exp] 108 / 1e-29 AT5G27370 153 / 5e-47 Protein of unknown function (DUF679) (.1) Potri.004G223500 [exp] 104 / 6e-28 AT3G02430 195 / 1e-62 Protein of unknown function (DUF679) (.1) Potri.008G087000 [exp] 102 / 4e-27 AT1G09157 254 / 1e-85 Protein of unknown function (DUF679) (.1) Potri.013G116300 [exp] 101 / 1e-26 AT3G02430 94 / 9e-24 Protein of unknown function (DUF679) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041247 [exp] 211 / 5e-70 AT3G21550 241 / 8e-82 Arabidopsis thaliana DUF679 domain membrane protein 2, DUF679 domain membrane protein 2 (.1) Lus10021955 [exp] 209 / 4e-69 AT3G21550 237 / 3e-80 Arabidopsis thaliana DUF679 domain membrane protein 2, DUF679 domain membrane protein 2 (.1) Lus10015394 [exp] 138 / 9e-41 AT4G18425 273 / 1e-93 Protein of unknown function (DUF679) (.1) Lus10013969 [exp] 137 / 1e-40 AT4G18425 274 / 5e-94 Protein of unknown function (DUF679) (.1) Lus10013975 [exp] 132 / 3e-38 AT4G18425 257 / 3e-87 Protein of unknown function (DUF679) (.1) Lus10013971 [exp] 130 / 1e-37 AT5G46090 234 / 2e-78 Protein of unknown function (DUF679) (.1) Lus10015396 [exp] 129 / 3e-37 AT5G46090 239 / 3e-80 Protein of unknown function (DUF679) (.1) Lus10013974 [exp] 125 / 5e-36 AT4G18425 238 / 1e-79 Protein of unknown function (DUF679) (.1) Lus10036581 [exp] 123 / 2e-35 AT3G02430 255 / 1e-86 Protein of unknown function (DUF679) (.1) Lus10018635 [exp] 120 / 4e-34 AT5G46090 192 / 8e-62 Protein of unknown function (DUF679) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05078 [poplar] [flax] DUF679 Protein of unknown function (DUF679)
Representative CDS sequence Show only first row Show all	>Potri.008G115100.1 pacid=42805948 polypeptide=Potri.008G115100.1.p locus=Potri.008G115100 ID=Potri.008G115100.1.v4.1 annot-version=v4.1 ATGGCCACTAAAACCAAGGAAAGCTCCATCCAGGACAAGACATTTTCAGGAGTCGGAAACCTCGTAAAGCTCCTCCCAACAGGAACAGTTTTTATGTTCC AATTCCTTAACCCTGTCTTGACCAACAACGGCCAGTGTCACACCGTTAACAAGTACCTGAGTGGCATTCTCATGGGCCTCTGTGGCTTCTCTTGCTGTTT CTCTTGTTTCACCGACAGTTACAGGGGCAGTGATGGCTGGACTCACTATGGAATTGCAACCATGAAAGGGCTTAGGCCATCTTCAGATTCGTCTGCTGGG TCGTCCGTGGACTTGTCAAGTTACAAGCTTCGAGTTGGTGACTTTGCTCATGCTTTCTTTTCCTTGATCGTGTTTGCTGTGTTGTCCCTGTTGGATAGGA ACACAGTCAAGTGCTTTAATCCTTCTTTCGAGTCCACTGAGAAGGTGTTGCTCATGGTGTTGCCTCCTGCCATTGGTGCAGTTTCGGGTACGGTTTTCAT GTTGTTCCCTAACAAGCGCCATGGAATTGGATACCCTTCAAGTGATTCTTCACAGGATTCTTATTGA
AA sequence Show only first row Show all	>Potri.008G115100.1 pacid=42805948 polypeptide=Potri.008G115100.1.p locus=Potri.008G115100 ID=Potri.008G115100.1.v4.1 annot-version=v4.1 MATKTKESSIQDKTFSGVGNLVKLLPTGTVFMFQFLNPVLTNNGQCHTVNKYLSGILMGLCGFSCCFSCFTDSYRGSDGWTHYGIATMKGLRPSSDSSAG SSVDLSSYKLRVGDFAHAFFSLIVFAVLSLLDRNTVKCFNPSFESTEKVLLMVLPPAIGAVSGTVFMLFPNKRHGIGYPSSDSSQDSY

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G21550		AtDMP2	Arabidopsis thaliana DUF679 do...		Potri.008G115100 [exp]	0	1
AT2G26110			Protein of unknown function (D...		Potri.001G008160 [exp]	3.46	0.8852
					Potri.019G038310 [exp]	6.00	0.8732
AT3G57690		AGP23, ATAGP23	ARABINOGALACTAN-PROTEIN 23, ar...		Potri.006G056200 [exp]	6.32	0.8404
AT2G42320			nucleolar protein gar2-related...		Potri.016G051500 [exp]	6.70	0.8620
AT1G66120			AMP-dependent synthetase and l...		Potri.006G036300 [exp]	6.92	0.8124
AT1G16390		3-Oct, ATOCT3	organic cation/carnitine trans...		Potri.010G174400 [exp]	7.34	0.8536
AT1G11910		ATAPA1, APA1	aspartic proteinase A1 (.1)		Potri.004G007600 [exp]	8.12	0.8800
AT5G23810		AAP7	amino acid permease 7 (.1.2)		Potri.011G167000 [exp]	8.36	0.8244	PtrAAP10
AT5G05960			Bifunctional inhibitor/lipid-t...		Potri.010G196300 [exp]	8.77	0.8533
AT1G04410		c-NAD-MDH1	cytosolic-NAD-dependent malate...		Potri.002G141700 [exp]	9.94	0.8366

Compare expression of checked genes

Potri.008G115100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.