Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38630 273 / 5e-93 ACYB-1 cytochrome B561-1 (.1) AT4G25570 162 / 2e-49 ACYB-2 Cytochrome b561/ferric reductase transmembrane protein family (.1) AT1G26100 134 / 2e-38 Cytochrome b561/ferric reductase transmembrane protein family (.1) AT1G14730 125 / 3e-35 Cytochrome b561/ferric reductase transmembrane protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G103800 [exp] 310 / 2e-107 AT5G38630 301 / 2e-104 cytochrome B561-1 (.1) Potri.017G111700 [exp] 296 / 3e-102 AT5G38630 321 / 2e-112 cytochrome B561-1 (.1) Potri.012G141000 [exp] 168 / 4e-52 AT4G25570 254 / 5e-86 Cytochrome b561/ferric reductase transmembrane protein family (.1) Potri.015G143700 [exp] 168 / 7e-52 AT4G25570 297 / 8e-103 Cytochrome b561/ferric reductase transmembrane protein family (.1) Potri.008G115200 [exp] 153 / 8e-46 AT1G26100 270 / 6e-92 Cytochrome b561/ferric reductase transmembrane protein family (.1) Potri.010G131100 [exp] 152 / 2e-45 AT1G26100 270 / 6e-92 Cytochrome b561/ferric reductase transmembrane protein family (.1) Potri.008G138300 [exp] 147 / 1e-43 AT1G14730 252 / 2e-85 Cytochrome b561/ferric reductase transmembrane protein family (.1) Potri.010G102400 [exp] 144 / 2e-42 AT1G14730 271 / 7e-93 Cytochrome b561/ferric reductase transmembrane protein family (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003076 [exp] 226 / 2e-75 AT5G38630 281 / 2e-97 cytochrome B561-1 (.1) Lus10034074 [exp] 217 / 4e-70 AT5G38630 287 / 7e-98 cytochrome B561-1 (.1) Lus10039216 [exp] 178 / 7e-56 AT4G25570 305 / 6e-106 Cytochrome b561/ferric reductase transmembrane protein family (.1) Lus10038866 [exp] 166 / 3e-51 AT4G25570 326 / 3e-114 Cytochrome b561/ferric reductase transmembrane protein family (.1) Lus10014986 [exp] 165 / 1e-49 AT4G25570 331 / 8e-115 Cytochrome b561/ferric reductase transmembrane protein family (.1) Lus10027461 [exp] 157 / 3e-47 AT4G25570 287 / 3e-98 Cytochrome b561/ferric reductase transmembrane protein family (.1) Lus10034427 [exp] 134 / 1e-38 AT1G14730 280 / 4e-96 Cytochrome b561/ferric reductase transmembrane protein family (.1) Lus10031935 [exp] 126 / 1e-35 AT1G14730 284 / 8e-98 Cytochrome b561/ferric reductase transmembrane protein family (.1) Lus10021715 [exp] 120 / 2e-33 AT1G26100 241 / 3e-80 Cytochrome b561/ferric reductase transmembrane protein family (.1) Lus10028996 [exp] 107 / 2e-28 AT4G25570 145 / 4e-43 Cytochrome b561/ferric reductase transmembrane protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0328 [poplar] [flax] 2heme_cytochrom PF03188 [poplar] [flax] Cytochrom_B561 Eukaryotic cytochrome b561
Representative CDS sequence Show only first row Show all	>Potri.008G115300.1 pacid=42806998 polypeptide=Potri.008G115300.1.p locus=Potri.008G115300 ID=Potri.008G115300.1.v4.1 annot-version=v4.1 ATGGATGTTCCGGTGATTAGGTTTCCGACTATAACTCTGATGGTGAGAGTAATCGGAGTGTTGGTGGCTGCTTTCGTTCTAATTTGGACCTTCCATTTCA GAGGAGGCTTGGCTCTTTCATCTGATAACAAAAGCCTCATCTTCAATGTGCATCCTGTTCTTCTGGTGATTGGTCTTGTTCTCTTGAATGGTGAAGCGAT GCTAGCTTACAAGACTGTATCAGGAACTAAAAGTTTCAGAAAGATAGTGCATCTGACAATGCAATCTATGGCATTTTGTTTAAGCACAATAGGAGTCTGG GCTGCTTATAAGTTCCACAGTGAGAAGGGTGTTGATCATTTCTACACTCTGCATTCATGGCTGGGCTTAACTTGTTTATTCCTCTTTGGTACTCAGTGGG CTGCTGGCTTTTACACGTTTTGGTATCCTGGTGGTTCAATAAACAGTAGAGCTGCTCTACTTCCCTGGCATGTATTCTTCGGGATTTATATATATGCACT TGCTGTTGCCACTACTGCCACAGGAATTCTAGAGAAAGCTACATTCTTGCAAATGCACAACATAACATCGCCCTACTCCACTGAGGCATATTTGGTGAAT TCCCTGGGTATGCTGGTTGTTGTTCTTGGTGGTTGTGTAATACTTGCCATAGTTACACCTATGAGTGCTAAAGGTGATGCTCTTAGAACACAAGAGTATC AAATGCAATATCCTTCTGTGTAA
AA sequence Show only first row Show all	>Potri.008G115300.1 pacid=42806998 polypeptide=Potri.008G115300.1.p locus=Potri.008G115300 ID=Potri.008G115300.1.v4.1 annot-version=v4.1 MDVPVIRFPTITLMVRVIGVLVAAFVLIWTFHFRGGLALSSDNKSLIFNVHPVLLVIGLVLLNGEAMLAYKTVSGTKSFRKIVHLTMQSMAFCLSTIGVW AAYKFHSEKGVDHFYTLHSWLGLTCLFLFGTQWAAGFYTFWYPGGSINSRAALLPWHVFFGIYIYALAVATTATGILEKATFLQMHNITSPYSTEAYLVN SLGMLVVVLGGCVILAIVTPMSAKGDALRTQEYQMQYPSV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G38630		ACYB-1	cytochrome B561-1 (.1)		Potri.008G115300 [exp]	0	1
AT1G80500			SNARE-like superfamily protein...		Potri.001G043400 [exp]	11.61	0.7760
AT3G01280		VDAC1, ATVDAC1	ARABIDOPSIS THALIANA VOLTAGE D...		Potri.010G033500 [exp]	11.95	0.7649	POR1.2
AT1G12230			Aldolase superfamily protein (...		Potri.001G120400 [exp]	16.58	0.7695
AT2G26260		AT3BETAHSD/D2	3beta-hydroxysteroid-dehydroge...		Potri.006G218400 [exp]	16.64	0.8139
AT3G19340			Protein of unknown function (D...		Potri.002G237700 [exp]	17.83	0.7834
AT1G72175			RING/U-box protein with domain...		Potri.013G105400 [exp]	18.89	0.7539
AT5G49510		PFD3, PDF3	prefoldin 3 (.1.2)		Potri.010G147600 [exp]	22.71	0.7986
AT5G57330			Galactose mutarotase-like supe...		Potri.003G187300 [exp]	22.91	0.7855
AT3G03890			FMN binding (.1.2)		Potri.013G057700 [exp]	26.92	0.7514
AT5G59890		ADF4, ATADF4	actin depolymerizing factor 4 ...		Potri.001G236700 [exp]	31.46	0.7721	ADF1,Pt-ADF.5

Compare expression of checked genes

Potri.008G115300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.