Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G25682 446 / 7e-159 Family of unknown function (DUF572) (.1) AT1G25988 127 / 8e-36 Family of unknown function (DUF572) (.1) AT1G17130 80 / 8e-17 Family of unknown function (DUF572) (.1), Family of unknown function (DUF572) (.2) AT3G43250 66 / 2e-12 Family of unknown function (DUF572) (.1) AT2G32050 60 / 3e-10 Family of unknown function (DUF572) (.1) AT2G29430 52 / 2e-08 Family of unknown function (DUF572) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G130300 [exp] 550 / 0 AT1G25682 436 / 3e-155 Family of unknown function (DUF572) (.1) Potri.011G096100 [exp] 76 / 1e-15 AT1G17130 375 / 1e-130 Family of unknown function (DUF572) (.1), Family of unknown function (DUF572) (.2) Potri.001G377800 [exp] 74 / 6e-15 AT1G17130 396 / 1e-138 Family of unknown function (DUF572) (.1), Family of unknown function (DUF572) (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041495 [exp] 467 / 2e-166 AT1G25682 467 / 1e-166 Family of unknown function (DUF572) (.1) Lus10034268 [exp] 463 / 9e-166 AT1G25682 479 / 2e-172 Family of unknown function (DUF572) (.1) Lus10005575 [exp] 81 / 6e-17 AT1G17130 391 / 1e-136 Family of unknown function (DUF572) (.1), Family of unknown function (DUF572) (.2) Lus10013706 [exp] 76 / 2e-16 AT1G17130 293 / 5e-101 Family of unknown function (DUF572) (.1), Family of unknown function (DUF572) (.2) Lus10013707 [exp] 77 / 6e-16 AT1G17130 391 / 8e-137 Family of unknown function (DUF572) (.1), Family of unknown function (DUF572) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04502 [poplar] [flax] DUF572 Family of unknown function (DUF572)
Representative CDS sequence Show only first row Show all	>Potri.008G115700.1 pacid=42808387 polypeptide=Potri.008G115700.1.p locus=Potri.008G115700 ID=Potri.008G115700.1.v4.1 annot-version=v4.1 ATGTCTTCTCTTGCAGCAGCTAGAGCCGATAATTTTTACTACCCGCCGGAATGGTCCCCGAAAAAGGGTGGTTTGAACAAATTCCATGGGCAACATGCAT TGAGGGAGAGAGCAAGAAAATTAGACCAGGGTATTTTGATAATAAGGTTCGAAATGCCCTTCAATATATGGTGTGGTGGTTGCAATTCTATGATTGCAAA GGGTGTTCGTTTCAATGCAGAGAAAAAGCAAGTGGGAAATTATTATTCTACAAAGATATGGAGCTTTACCATGAAATCTGCATGCTGCAAACATGAAATT GTTATCCATACAGATCCAAAAAATTGCGAGTATGTGATTATTAGTGGGGCTCAACGAAAAAATGAGGAGTTTGATGTTGAGGATGCAGAAACATTTGCAC TCCCTGCAGATGAAGAGAAAGGCAAGCTTTCAGATCCATTTTACCGTCTTGAGCATCAGGAAGAGGATTTGCAGAAGAAGAAAGAAGCTGAGCCTGTTCT AGTCCGCCTTCAGCGAGTATCTGATGCCAGGCATTCGGATGACTATGCCCTCAACAAGGCTCTTCGTGCCCGAATGAGAAGTCATAAGAAAAGAGTTGCT GAAGAAGAGTCCACTTCCAGGAAAATGGGTCTTGGCATACGCTTGCTTCCAGCAACTGAAGAAGATGCTGTCTCTGCAGCTCATGTAAAGTTCTCTTCCA AGTTTGACAAAAATAGGAAGGATAAGCGAGCATTGATCAGTGCTGCTTCAATATTTCCTGGGTCATCTGGTTCTTCAATGTCCAATAAGAAACGTTTGGA GCTAGAATCCAAGAGAAGGAAAATTAGTGCTGCTGCGGCCACTAATTTGCTGACGGGGGGTTTCAAGCCATCATCATGGTCACAGGGTACGGTTTCTTGC AGCAAGCGCAAGCAGAATTCCATGAATGCCAGACGTGTTTAG
AA sequence Show only first row Show all	>Potri.008G115700.1 pacid=42808387 polypeptide=Potri.008G115700.1.p locus=Potri.008G115700 ID=Potri.008G115700.1.v4.1 annot-version=v4.1 MSSLAAARADNFYYPPEWSPKKGGLNKFHGQHALRERARKLDQGILIIRFEMPFNIWCGGCNSMIAKGVRFNAEKKQVGNYYSTKIWSFTMKSACCKHEI VIHTDPKNCEYVIISGAQRKNEEFDVEDAETFALPADEEKGKLSDPFYRLEHQEEDLQKKKEAEPVLVRLQRVSDARHSDDYALNKALRARMRSHKKRVA EEESTSRKMGLGIRLLPATEEDAVSAAHVKFSSKFDKNRKDKRALISAASIFPGSSGSSMSNKKRLELESKRRKISAAAATNLLTGGFKPSSWSQGTVSC SKRKQNSMNARRV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G25682			Family of unknown function (DU...		Potri.008G115700 [exp]	0	1
AT4G29160		SNF7.1	SNF7 family protein (.1.2.3)		Potri.018G069900 [exp]	2.23	0.7526
AT1G27500			Tetratricopeptide repeat (TPR)...		Potri.012G080100 [exp]	2.82	0.6944
AT3G19950			RING/U-box superfamily protein...		Potri.007G074014 [exp]	5.47	0.6998
AT5G02570			Histone superfamily protein (....		Potri.009G028001 [exp]	6.32	0.7046
AT3G22750			Protein kinase superfamily pro...		Potri.008G156000 [exp]	8.12	0.7282
AT2G02390		GST18, ATGSTZ1	GLUTATHIONE S-TRANSFERASE 18, ...		Potri.014G069600 [exp]	9.16	0.6763
					Potri.009G086900 [exp]	10.81	0.6885
AT3G61200			Thioesterase superfamily prote...		Potri.014G078900 [exp]	12.36	0.6737
AT5G51400			PLAC8 family protein (.1)		Potri.003G108800 [exp]	13.71	0.7096
AT4G31130			Protein of unknown function (D...		Potri.006G280900 [exp]	13.78	0.6629

Compare expression of checked genes

Potri.008G115700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.