Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25700 530 / 0 Eukaryotic aspartyl protease family protein (.1.2) AT2G42980 207 / 9e-61 Eukaryotic aspartyl protease family protein (.1) AT3G59080 202 / 5e-59 Eukaryotic aspartyl protease family protein (.1.2) AT1G01300 199 / 3e-58 Eukaryotic aspartyl protease family protein (.1) AT3G12700 197 / 5e-58 Eukaryotic aspartyl protease family protein (.1.2) AT3G61820 185 / 5e-53 Eukaryotic aspartyl protease family protein (.1) AT2G03200 183 / 2e-52 Eukaryotic aspartyl protease family protein (.1) AT3G18490 160 / 7e-44 Eukaryotic aspartyl protease family protein (.1) AT1G25510 159 / 3e-43 Eukaryotic aspartyl protease family protein (.1) AT3G20015 157 / 1e-42 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G204600 [exp] 221 / 9e-66 AT3G59080 686 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.002G171700 [exp] 200 / 1e-58 AT1G01300 642 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.001G306200 [exp] 186 / 1e-53 AT2G03200 501 / 1e-176 Eukaryotic aspartyl protease family protein (.1) Potri.014G099400 [exp] 185 / 7e-53 AT1G01300 633 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.019G002100 [exp] 181 / 8e-52 AT2G03200 529 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.005G063000 [exp] 175 / 3e-49 AT3G20015 560 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.006G232600 [exp] 173 / 1e-48 AT5G10770 438 / 1e-150 Eukaryotic aspartyl protease family protein (.1) Potri.007G106300 [exp] 171 / 1e-47 AT3G20015 575 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.015G113100 [exp] 169 / 3e-47 AT5G45120 588 / 0.0 Eukaryotic aspartyl protease family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041494 [exp] 528 / 0 AT3G25700 559 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10034270 [exp] 222 / 1e-70 AT3G25700 237 / 5e-77 Eukaryotic aspartyl protease family protein (.1.2) Lus10003999 [exp] 226 / 2e-68 AT1G01300 636 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10007335 [exp] 215 / 1e-63 AT3G59080 698 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10030246 [exp] 172 / 9e-49 AT1G01300 472 / 3e-165 Eukaryotic aspartyl protease family protein (.1) Lus10035961 [exp] 158 / 4e-43 AT2G03200 525 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10025702 [exp] 157 / 1e-41 AT2G03200 529 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10037254 [exp] 152 / 7e-41 AT2G35615 392 / 1e-133 Eukaryotic aspartyl protease family protein (.1) Lus10034269 [exp] 140 / 4e-39 ND 149 / 5e-44 Lus10041151 [exp] 145 / 1e-38 AT5G33340 445 / 1e-154 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [poplar] [flax] Peptidase_AA PF14543 [poplar] [flax] TAXi_N Xylanase inhibitor N-terminal
Representative CDS sequence Show only first row Show all	>Potri.008G115900.1 pacid=42806609 polypeptide=Potri.008G115900.1.p locus=Potri.008G115900 ID=Potri.008G115900.1.v4.1 annot-version=v4.1 ATGGTGTCTCTCTCCCTCCTCTTCCACCTCCTTTTACTCGCCTTCGTGGATCTCTCCACCTCCACGACGGAATACCTTAAACTCCCATTACTCCACAAAA CACCATTTCCTACCCCACTCCAATCCCTCTCTTCAGACCTCCAACGTCTCTCTCTTCTCCATCACAGCCACCACCGCCACCAAAACCACCGTCGAACCTC CTCCAAATCCCCCTTGATGTCCGGAGCTTCCTCCGGCTCTGGCCAATACTTTGTCTCCATCCGCCTTGGCTCCCCACCTCAAACCCTCCTCCTCGTTGCA GATACCGGGAGCGACCTCACTTGGGTTAGATGCTCTGCTTGCAAGACTAACTGCTCCATCCACCCGCCCGGATCCACATTCCTCGCTCGCCATTCAACCA CCTTCTCCCCAACTCACTGTTTCAGCTCACTGTGTCAGCTCGTCCCTCAACCCAACCCCAATCCCTGCAACCACACTCGCCTTCACAGCACCTGTAGATA CGAGTACGTCTACTCTGATGGGTCCAAAACTTCTGGGTTCTTTTCCAAAGAAACCACGACCTTAAATACAAGCTCCGGTAGAGAAATGAAGCTGAAGAGC ATCGCATTCGGGTGCGGGTTTCATGCTTCGGGTCCGAGTCTCATCGGGTCGAGTTTTAATGGGGCCAGTGGTGTAATGGGCTTAGGCCGGGGGCCCATCT CGTTTGCTTCTCAGTTGGGCCGTCGATTTGGTCGCAGCTTCTCTTATTGCCTGTTGGATTATACTCTCTCGCCTCCTCCAACCAGCTATCTCATGATCGG CGACGTCGTTTCCACTAAGAAGGATAATAAAAGCATGATGAGCTTCACGCCGTTGTTAATTAACCCTGAAGCCCCCACCTTTTACTACATTTCCATTAAA GGAGTGTTTGTTGACGGTGTAAAACTACATATTGACCCTTCTGTGTGGTCACTCGACGAGTTAGGTAACGGCGGGACAGTTATTGACTCAGGGACGACGT TAACTTTCTTAACAGAGCCAGCTTACCGTGAGATATTATCGGCGTTTAAGCGTGAAGTGAAGCTACCGAGTCCAACTCCAGGGGGTGCGTCCACTCAGAG TGGTTTTGATCTTTGTGTGAACGTGACGGGCGTGTCAAGACCGAGATTTCCAAGACTGAGTTTGGAACTCGGTGGTGAGTCGTTGTATTCGCCGCCGCCA AGGAACTATTTTATAGATATAAGCGAGGGAATCAAGTGTTTGGCGATTCAACCCGTTGAGGCGGAGAGTGGTAGGTTTTCGGTGATTGGGAATCTGATGC AACAAGGATTTTTGTTGGAGTTTGATAGGGGCAAATCTCGGCTCGGTTTTTCACGTCGCGGTTGTGCTGTCTCGTGA
AA sequence Show only first row Show all	>Potri.008G115900.1 pacid=42806609 polypeptide=Potri.008G115900.1.p locus=Potri.008G115900 ID=Potri.008G115900.1.v4.1 annot-version=v4.1 MVSLSLLFHLLLLAFVDLSTSTTEYLKLPLLHKTPFPTPLQSLSSDLQRLSLLHHSHHRHQNHRRTSSKSPLMSGASSGSGQYFVSIRLGSPPQTLLLVA DTGSDLTWVRCSACKTNCSIHPPGSTFLARHSTTFSPTHCFSSLCQLVPQPNPNPCNHTRLHSTCRYEYVYSDGSKTSGFFSKETTTLNTSSGREMKLKS IAFGCGFHASGPSLIGSSFNGASGVMGLGRGPISFASQLGRRFGRSFSYCLLDYTLSPPPTSYLMIGDVVSTKKDNKSMMSFTPLLINPEAPTFYYISIK GVFVDGVKLHIDPSVWSLDELGNGGTVIDSGTTLTFLTEPAYREILSAFKREVKLPSPTPGGASTQSGFDLCVNVTGVSRPRFPRLSLELGGESLYSPPP RNYFIDISEGIKCLAIQPVEAESGRFSVIGNLMQQGFLLEFDRGKSRLGFSRRGCAVS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G25700			Eukaryotic aspartyl protease f...		Potri.008G115900 [exp]	0	1
AT1G18650		PDCB3	plasmodesmata callose-binding ...		Potri.012G065750 [exp]	1.00	0.9219
AT2G05790			O-Glycosyl hydrolases family 1...		Potri.014G158400 [exp]	2.44	0.9066
AT5G15350		AtENODL17	early nodulin-like protein 17 ...		Potri.003G183300 [exp]	3.74	0.8861
AT3G24480			Leucine-rich repeat (LRR) fami...		Potri.006G158814 [exp]	4.00	0.8855
AT2G18910			hydroxyproline-rich glycoprote...		Potri.006G166400 [exp]	4.47	0.8657
AT2G36830		TIP1;1, GAMMA-T...	TONOPLAST INTRINSIC PROTEIN 1;...		Potri.006G121700 [exp]	4.58	0.9017	Pt-TIP2.7
AT1G70370		PG2	polygalacturonase 2 (.1.2)		Potri.010G040800 [exp]	5.19	0.8825
AT1G68350			unknown protein		Potri.010G122600 [exp]	8.06	0.8734
AT4G34260		AXY8, FUC95A	ALTERED XYLOGLUCAN 8, 1,2-alph...		Potri.009G093900 [exp]	10.48	0.8797
AT4G23740			Leucine-rich repeat protein ki...		Potri.003G136100 [exp]	11.48	0.8869

Compare expression of checked genes

Potri.008G115900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.