Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68810 259 / 6e-84 bHLH bHLH030 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G25710 206 / 1e-63 bHLH TMO5, BHLH32, bHLH032, ATAIG1 TARGET OF MONOPTEROS 5, basic helix-loop-helix 32 (.1) AT2G41130 107 / 4e-27 bHLH bHLH106 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G56770 100 / 8e-25 bHLH bHLH107 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT2G40200 80 / 6e-17 bHLH bHLH051 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G38070 65 / 3e-11 bHLH basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G00050 46 / 2e-05 bHLH bHLH016, UNE10 unfertilized embryo sac 10, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G61270 45 / 3e-05 bHLH PIF7, bHLH072 phytochrome-interacting factor7 (.1.2) AT2G16910 44 / 0.0002 bHLH AMS, bHLH021 ABORTED MICROSPORES, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G22770 43 / 0.0002 bHLH NAI1, bHLH020 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G130000 [exp] 499 / 1e-178 AT1G68810 269 / 1e-87 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.006G037100 [exp] 126 / 4e-34 AT2G41130 229 / 2e-75 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.016G035400 [exp] 116 / 1e-30 AT2G41130 231 / 2e-76 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.019G089000 [exp] 93 / 2e-21 AT1G68810 122 / 2e-32 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.010G186700 [exp] 92 / 2e-21 AT2G40200 132 / 3e-37 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.008G070800 [exp] 92 / 4e-21 AT2G40200 132 / 2e-37 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G105300 [exp] 85 / 6e-19 AT3G56770 110 / 1e-29 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.013G117600 [exp] 84 / 2e-18 AT3G56770 112 / 8e-30 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.004G055700 [exp] 83 / 4e-18 AT2G41130 120 / 1e-32 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035056 [exp] 259 / 1e-83 AT1G68810 321 / 6e-108 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10021711 [exp] 256 / 2e-82 AT1G68810 310 / 1e-103 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10034271 [exp] 163 / 2e-47 AT1G68810 218 / 2e-68 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10041493 [exp] 159 / 1e-45 AT3G25710 201 / 2e-62 TARGET OF MONOPTEROS 5, basic helix-loop-helix 32 (.1) Lus10042017 [exp] 112 / 8e-29 AT2G41130 204 / 2e-65 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10018020 [exp] 110 / 7e-28 AT2G41130 206 / 1e-65 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10007502 [exp] 88 / 4e-20 AT2G40200 163 / 8e-50 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10038306 [exp] 86 / 4e-19 AT3G56770 102 / 2e-26 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10013917 [exp] 82 / 2e-17 AT2G40200 122 / 2e-33 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10028978 [exp] 79 / 7e-17 AT2G40200 157 / 8e-48 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [poplar] [flax] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.008G116000.1 pacid=42806483 polypeptide=Potri.008G116000.1.p locus=Potri.008G116000 ID=Potri.008G116000.1.v4.1 annot-version=v4.1 ATGTGTGGACTTAAAGAAGAAGACCAAGAAGAGCAAACAATCCATAACCTCCAAAACTACCAAGAGCAGCTACTTTTTCAATACCACCAACAAATGCAAC AGCACCACCAACAACAAAGCAGTGATATCTATGGAGGAGCACGAGGATCAGGATTGATTTTCCCTGAAGTTTCACCGATCTTACCATGGCCTCTCCCTCC AGCCCACTCTTTTAACCCAGATCACTTCACTTCAAATCACCCAGTTCGTGACCATGACCCATTTCTTATCCCTCCTCCAATACCTTCCTCATATGGGGGT TTATTCAATAGAAGATCTCCTTCCCTTCAGTTTGCTTATGATGGTACATCAAGTGATCATCTTAGGATTATATCTGAAACTCTTGGACCAGTGGTTCAAC CCGGTTCAGCTCCTTTCGGGTTGCAAGCTGAGTTGAGCAACATGACTGCTCAAGAAATCATGGATGCTAAGGCTCTTGCTGCTTCTAAGAGTCACAGTGA GGCTGAGAGGAGAAGAAGAGAGAGAATCAACAACCACCTTGCCAAGCTACGTAGTTTACTACCCAGCACGACCAAAACAGACAAAGCTTCACTGCTAGCA GAAGTGATCCAACATGTTAAAGAGTTAAAACGCCAGACTTCTTTGATAGCCGAAACAAGTCCAGTACCAACAGAAATGGATGAGCTAACAGTGGATACAG CTGATGAAGATGGTAAGTTTGTGCTCAAAGCATCGCTTTGCTGCGAAGATAGGTCTGATCTCTTGCCTGACCTAATAAAAACCTTGAAAGCTTTGCGTTT AAGAACACTAAAAGCTGAGATCACGACACTTGGTGGACGTGTAAAGAATGTTTTGTTCATTGCTGGTGAAGAAGATTCATCAAGTGATAGCAATGATCAT CAACAGCAACAGCAACCACTGCAATATTCTATAAGCTCAATTCAAGAAGCACTGAAATCGGTTATGGAGAAGACAGGTGGTGACGAGTCTTCTTCAGGAA GTGTTAAGAGACAAAGAACCAATATCAATGTCCTTCAACAACAACACAGGTCTCTATAA
AA sequence Show only first row Show all	>Potri.008G116000.1 pacid=42806483 polypeptide=Potri.008G116000.1.p locus=Potri.008G116000 ID=Potri.008G116000.1.v4.1 annot-version=v4.1 MCGLKEEDQEEQTIHNLQNYQEQLLFQYHQQMQQHHQQQSSDIYGGARGSGLIFPEVSPILPWPLPPAHSFNPDHFTSNHPVRDHDPFLIPPPIPSSYGG LFNRRSPSLQFAYDGTSSDHLRIISETLGPVVQPGSAPFGLQAELSNMTAQEIMDAKALAASKSHSEAERRRRERINNHLAKLRSLLPSTTKTDKASLLA EVIQHVKELKRQTSLIAETSPVPTEMDELTVDTADEDGKFVLKASLCCEDRSDLLPDLIKTLKALRLRTLKAEITTLGGRVKNVLFIAGEEDSSSDSNDH QQQQQPLQYSISSIQEALKSVMEKTGGDESSSGSVKRQRTNINVLQQQHRSL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G68810	bHLH	bHLH030	basic helix-loop-helix (bHLH) ...		Potri.008G116000 [exp]	0	1
AT2G33770		ATUBC24, UBC24,...	UBIQUITIN-CONJUGATING ENZYME 2...		Potri.011G052600 [exp]	1.00	0.8990
AT5G66730	C2H2ZnF	IDD1, ENY	INDETERMINATE DOMAIN 1, ENHYDR...		Potri.007G028800 [exp]	10.72	0.8142
AT4G23980	ARF	ARF9	auxin response factor 9 (.1.2)		Potri.001G088600 [exp]	12.48	0.8200
AT4G35160			O-methyltransferase family pro...		Potri.013G122000 [exp]	15.23	0.8155
AT2G46780			RNA-binding (RRM/RBD/RNP motif...		Potri.012G022100 [exp]	19.05	0.8086
AT5G10970	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Potri.001G047500 [exp]	19.44	0.7751
AT1G31770		ABCG14	ATP-binding cassette G14, ATP-...		Potri.003G046800 [exp]	20.00	0.7770
AT2G38090	MYB	MYB-R	Duplicated homeodomain-like su...		Potri.010G193000 [exp]	20.19	0.7811
AT5G18270	NAC	ANAC087	Arabidopsis NAC domain contain...		Potri.019G031600 [exp]	29.46	0.7841
AT3G04670	WRKY	ATWRKY39, WRKY3...	WRKY DNA-binding protein 39 (....		Potri.005G055300 [exp]	29.93	0.7623	WRKY39.1

Compare expression of checked genes

Potri.008G116000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.