Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75290 242 / 4e-78 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G75280 239 / 7e-77 NmrA-like negative transcriptional regulator family protein (.1) AT4G39230 229 / 5e-73 NmrA-like negative transcriptional regulator family protein (.1) AT1G75300 227 / 3e-72 NmrA-like negative transcriptional regulator family protein (.1) AT1G19540 205 / 1e-63 NmrA-like negative transcriptional regulator family protein (.1) AT4G34540 204 / 3e-63 NmrA-like negative transcriptional regulator family protein (.1) AT1G32100 199 / 2e-61 ATPRR1 pinoresinol reductase 1 (.1) AT4G13660 176 / 2e-52 ATPRR2 pinoresinol reductase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G129800 [exp] 625 / 0 AT1G75290 241 / 2e-77 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.015G050200 [exp] 449 / 7e-159 AT1G75290 257 / 6e-84 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G118100 [exp] 242 / 4e-78 AT4G39230 501 / 0.0 NmrA-like negative transcriptional regulator family protein (.1) Potri.002G034400 [exp] 237 / 3e-76 AT1G75280 467 / 2e-167 NmrA-like negative transcriptional regulator family protein (.1) Potri.005G228700 [exp] 236 / 5e-76 AT1G75280 451 / 3e-161 NmrA-like negative transcriptional regulator family protein (.1) Potri.009G118300 [exp] 231 / 5e-74 AT4G39230 488 / 8e-176 NmrA-like negative transcriptional regulator family protein (.1) Potri.011G168400 [exp] 221 / 2e-69 AT4G39230 448 / 2e-159 NmrA-like negative transcriptional regulator family protein (.1) Potri.009G118000 [exp] 214 / 2e-67 AT4G34540 432 / 7e-154 NmrA-like negative transcriptional regulator family protein (.1) Potri.001G133200 [exp] 206 / 3e-64 AT1G32100 410 / 6e-145 pinoresinol reductase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035058 [exp] 424 / 3e-149 AT1G75290 212 / 2e-66 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10032470 [exp] 400 / 2e-139 AT1G75290 226 / 2e-71 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10026351 [exp] 254 / 9e-83 AT4G39230 481 / 4e-173 NmrA-like negative transcriptional regulator family protein (.1) Lus10042311 [exp] 254 / 1e-82 AT4G39230 489 / 4e-176 NmrA-like negative transcriptional regulator family protein (.1) Lus10040442 [exp] 241 / 8e-78 AT4G39230 462 / 2e-165 NmrA-like negative transcriptional regulator family protein (.1) Lus10023557 [exp] 243 / 2e-76 AT4G39230 461 / 2e-162 NmrA-like negative transcriptional regulator family protein (.1) Lus10026350 [exp] 236 / 1e-75 AT4G39230 454 / 3e-162 NmrA-like negative transcriptional regulator family protein (.1) Lus10026348 [exp] 235 / 3e-75 AT4G39230 442 / 2e-157 NmrA-like negative transcriptional regulator family protein (.1) Lus10012143 [exp] 206 / 3e-64 AT1G32100 447 / 1e-159 pinoresinol reductase 1 (.1) Lus10021709 [exp] 202 / 7e-64 AT1G75290 83 / 6e-19 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF01370 [poplar] [flax] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Potri.008G116500.1 pacid=42806781 polypeptide=Potri.008G116500.1.p locus=Potri.008G116500 ID=Potri.008G116500.1.v4.1 annot-version=v4.1 ATGACTGTTTCAGCTTCTATCCCCACAGCGAAGAGTCGAGTACTCATAGCCGGAGCAACTGGTTTTATCGGTCAATTCGTGGCCAAAGCTAGCCTAGACG CCGGTCGACCAACCTATGTTCTTGTCCGCCCTGGCCTTGCTGGCTGCCCTTCCAAGTCCAGAGTTCTCAAATCTCTTCATGACAAAGGAGCCATAATTTT ACATGGGTTGATTACTGACAGGGAAAACACGGAGAAAATACTTAAAGATCACGAGATTGACATTGTAATATCAGCAGTTGGGGGTGCAAATGTATTAGAC CAAGTTGCCCTGGTAGAGGCTATCAAAGCTGTTGGAACCGTTAAGAGATTTTTGCCATCAGAGTTTGGGCATGATGTAGTGAGGGCTGATCCTGTAGAGC CAGGGATGCAGATGTACAATGACAAGCGTGTAATCAGACGGCTGATTGAGGAGTATAGGATACCCTACAACTATATTTGTTGCAATTCAATTGCTTCTTG GCCTTACTACGACAACAAGCACCCTGCTGACGTTCTGCCTCCTTTGGATCACTTCAAAATATACGGTGATGGCACCGTTAGGGCTTACTTTGTTGCTGGC ACTGACATTGGGAAATTTACAATGAAAATTGTGGATGATGTGAGAGCTATCAACAAATCAGTTCATTTTCGACCATCCAGCAATTTCTATAACATGAATG AGCTTGCATCTCTGTGGGAAAAGAAAATCGGAAGAACCCTCCCTAGAGTTACAGTCACTGAAGAAGACCTACTTGCTATTGCTGCAGAGAATAACATACC AGAAAGCATAGTTGCATCATTCACACATGATATATTCATCAAGGGTTGTCAGTCTAATTTTTCAATCAATGGCCCTGATGATGTGGAAGTTGGCACTCTA TATCCCGATGAAGCTTTTCGTACCTTGGATGAATGTTTCGATGATTTTGCTCTCGAGTTGAAGGACAATAATAAGGATCTAGGCAGTAACGGAAATGCTA CTCCAAATCATGTGGTCGAGTCACTGGCTCTATCAGCACCCTGTGGTTTGTTGGTGTGA
AA sequence Show only first row Show all	>Potri.008G116500.1 pacid=42806781 polypeptide=Potri.008G116500.1.p locus=Potri.008G116500 ID=Potri.008G116500.1.v4.1 annot-version=v4.1 MTVSASIPTAKSRVLIAGATGFIGQFVAKASLDAGRPTYVLVRPGLAGCPSKSRVLKSLHDKGAIILHGLITDRENTEKILKDHEIDIVISAVGGANVLD QVALVEAIKAVGTVKRFLPSEFGHDVVRADPVEPGMQMYNDKRVIRRLIEEYRIPYNYICCNSIASWPYYDNKHPADVLPPLDHFKIYGDGTVRAYFVAG TDIGKFTMKIVDDVRAINKSVHFRPSSNFYNMNELASLWEKKIGRTLPRVTVTEEDLLAIAAENNIPESIVASFTHDIFIKGCQSNFSINGPDDVEVGTL YPDEAFRTLDECFDDFALELKDNNKDLGSNGNATPNHVVESLALSAPCGLLV

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G75290			NAD(P)-binding Rossmann-fold s...		Potri.008G116500 [exp]	0	1
AT5G45890		SAG12	senescence-associated gene 12 ...		Potri.004G055900 [exp]	3.31	0.9380
AT3G57810			Cysteine proteinases superfami...		Potri.008G026100 [exp]	3.46	0.9157
AT4G22920		ATNYE1, SGR1, S...	non-yellowing 1 (.1)		Potri.003G119600 [exp]	9.64	0.9152
AT5G45890		SAG12	senescence-associated gene 12 ...		Potri.004G056258 [exp]	10.19	0.9051
AT5G45890		SAG12	senescence-associated gene 12 ...		Potri.004G056366 [exp]	10.81	0.9028
AT2G47180		ATGOLS1	galactinol synthase 1 (.1)		Potri.010G150400 [exp]	11.31	0.9129	Pt-GAS1.2
AT5G45890		SAG12	senescence-associated gene 12 ...		Potri.004G056316 [exp]	11.40	0.9018
AT1G54100		ALDH7B4	aldehyde dehydrogenase 7B4 (.1...		Potri.001G167100 [exp]	12.96	0.8852	ALDH7.1
AT5G47470			Nodulin MtN21 /EamA-like trans...		Potri.001G157600 [exp]	13.78	0.8856
AT3G54200			Late embryogenesis abundant (L...		Potri.016G142300 [exp]	14.07	0.8768

Compare expression of checked genes

Potri.008G116500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.