Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G25580 509 / 7e-180 NAC ANAC008, SOG1 SUPPRESSOR OF GAMMA RADIATION 1, Arabidopsis NAC domain containing protein 8, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT3G01600 244 / 4e-77 NAC ANAC044 NAC domain containing protein 44 (.1) AT4G29230 244 / 9e-76 NAC ANAC075, NST9 NAC domain containing protein 75 (.1) AT5G14490 239 / 2e-75 NAC ANAC085 NAC domain containing protein 85 (.1) AT1G28470 234 / 3e-74 NAC ANA010, ANAC010, SND3, NST8 SECONDARY WALL-ASSOCIATED NAC DOMAIN PROTEIN 3, NAC domain containing protein 10 (.1) AT4G28500 226 / 7e-71 NAC ANAC073, SND2, NST7 SECONDARY WALL-ASSOCIATED NAC DOMAIN PROTEIN 2, NAC domain containing protein 73 (.1) AT5G56620 221 / 5e-68 NAC ANAC099 NAC domain containing protein 99 (.1) AT3G18400 74 / 2e-14 NAC ANAC058 NAC domain containing protein 58 (.1) AT3G04060 71 / 3e-13 NAC ANAC046 NAC domain containing protein 46 (.1) AT1G01720 69 / 7e-13 NAC ATAF1, ANAC002 Arabidopsis NAC domain containing protein 2, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G129700 [exp] 728 / 0 AT1G25580 476 / 5e-167 SUPPRESSOR OF GAMMA RADIATION 1, Arabidopsis NAC domain containing protein 8, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.001G343800 [exp] 293 / 5e-96 AT3G01600 266 / 5e-86 NAC domain containing protein 44 (.1) Potri.017G016700 [exp] 239 / 3e-76 AT4G28500 344 / 4e-119 SECONDARY WALL-ASSOCIATED NAC DOMAIN PROTEIN 2, NAC domain containing protein 73 (.1) Potri.004G049300 [exp] 238 / 1e-75 AT4G28500 353 / 1e-122 SECONDARY WALL-ASSOCIATED NAC DOMAIN PROTEIN 2, NAC domain containing protein 73 (.1) Potri.011G058400 [exp] 239 / 4e-75 AT4G28500 344 / 4e-118 SECONDARY WALL-ASSOCIATED NAC DOMAIN PROTEIN 2, NAC domain containing protein 73 (.1) Potri.018G068700 [exp] 240 / 2e-74 AT4G29230 511 / 2e-179 NAC domain containing protein 75 (.1) Potri.006G152700 [exp] 239 / 3e-74 AT4G29230 489 / 9e-171 NAC domain containing protein 75 (.1) Potri.007G135300 [exp] 221 / 6e-69 AT4G28500 337 / 3e-116 SECONDARY WALL-ASSOCIATED NAC DOMAIN PROTEIN 2, NAC domain containing protein 73 (.1) Potri.002G005800 [exp] 73 / 8e-14 AT1G76420 326 / 7e-110 CUP SHAPED COTYLEDON3, Arabidopsis NAC domain containing protein 31, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041492 [exp] 544 / 0 AT1G25580 486 / 7e-171 SUPPRESSOR OF GAMMA RADIATION 1, Arabidopsis NAC domain containing protein 8, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10021708 [exp] 522 / 0 AT1G25580 462 / 4e-161 SUPPRESSOR OF GAMMA RADIATION 1, Arabidopsis NAC domain containing protein 8, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10003668 [exp] 278 / 2e-89 AT5G14490 273 / 2e-88 NAC domain containing protein 85 (.1) Lus10034999 [exp] 245 / 1e-75 AT4G29230 388 / 3e-130 NAC domain containing protein 75 (.1) Lus10012927 [exp] 239 / 2e-74 AT4G29230 346 / 3e-115 NAC domain containing protein 75 (.1) Lus10013967 [exp] 233 / 2e-73 AT4G28500 320 / 2e-109 SECONDARY WALL-ASSOCIATED NAC DOMAIN PROTEIN 2, NAC domain containing protein 73 (.1) Lus10039873 [exp] 228 / 1e-71 AT4G28500 355 / 5e-123 SECONDARY WALL-ASSOCIATED NAC DOMAIN PROTEIN 2, NAC domain containing protein 73 (.1) Lus10018637 [exp] 228 / 1e-71 AT4G28500 350 / 2e-121 SECONDARY WALL-ASSOCIATED NAC DOMAIN PROTEIN 2, NAC domain containing protein 73 (.1) Lus10015392 [exp] 222 / 9e-70 AT4G28500 308 / 2e-105 SECONDARY WALL-ASSOCIATED NAC DOMAIN PROTEIN 2, NAC domain containing protein 73 (.1) Lus10025690 [exp] 67 / 6e-12 AT1G01720 405 / 1e-143 Arabidopsis NAC domain containing protein 2, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [poplar] [flax] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Potri.008G116600.1 pacid=42806190 polypeptide=Potri.008G116600.1.p locus=Potri.008G116600 ID=Potri.008G116600.1.v4.1 annot-version=v4.1 ATGGCTGGGCCATGGCTGGTGGATGGTAATAGATTCGCAACAAAAATCAAGAGTGCTTCTAGCGCAAGTAATCATGAAAGAGTTGCATGGAAGAGTGATC CTTGTAAAACTTGTCCAAATTGCCACCATGTTATTGACAACAGTGATGTTGTTCAAGAGTGGCCTGGATTACCCAGAGGGGTGAAATTTGATCCTTCTGA TCAAGAAATTATTTGGCATTTACTTGCAAAAGCTGGCAATGGAGGCATAAAATCTCATCCTTTTATTAAAGAGTTCATTCCAACTGTTGAAAATGATGAT GGAATCTGCTATACCCATCCTAAGAATCTACCAGGTGTTAAGCAAGATGGCAGTATATCCCACTTCTTTCATAGAGCAATCAAAGCATACAATACTGGGA CTCGAAAGCGTCGAAAGATTCAAGGTGATGATTCTGGTGATGTCCGCTGGCACAAGACTGGCAGGACCAAACCAGTGATCTTGGATGGGGTTCAGAAAGG GTGTAAAAAGATTATGGTTCTTTACACAAGTACTGTCAGAGGAGGTAAAGCTGAGAAAACTAATTGGGTGATGCATCAATATCACCTGGGAACAGGGGAG GATGAGAGGGATGGAGAGTATGTAGTTTCCAAAGTATTTTATCAGCAACAAGCAGCGAACAAGGGAGAAAAAACTGAAGAAGATTTATCTGAAATTGCTA ATGCAGTGGTTGCAAAAGTAGATCCAGTCACTCCCAAGTCTGTAACTCCTGACCCACCTCGTGCTGAAAGGCGATGCCAAGATTTTGACCTGGGAAAGGA ATCTACTAATGTTTGCACAGAACCCTATGCTGAGCATCCCGGGGTTGAAAATTTAGAAGAGGCTAATCTTCAACATGAAAGCCCCTGTTACAACGACCAA CCAGGGATGGAAAATCATGTTGATCAAATGGTAGGTGATAATGATAACTGTGCTGAGGAAGGGACAAAATGGTGGGACAGTGAGTCACAACATCTGTTGG ATTCACAACAACTTGTGGAAGGGCTATCTTTGTGCGATGAGTTTCTTCAGAGCCAATCCCCAAGCAGGGGTGGACATGGGACTGGAGCGAGTGGCAAATC TGGTCTTTCTGATTATGCTCGTTTGGGGCCAGAGCACTTAAAGAAAGATCTAGAGGAGTGCCAGAATCTGGAACTTGATCCAGCAAACATAGAACTTGAT ACACCTCCAGAATTCAGACTAAGCCAGCTTGAATTTGGATCACAGGATAGCTTTATGGCATGGGGTGAAGGCAGGGTGGCTGACTAA
AA sequence Show only first row Show all	>Potri.008G116600.1 pacid=42806190 polypeptide=Potri.008G116600.1.p locus=Potri.008G116600 ID=Potri.008G116600.1.v4.1 annot-version=v4.1 MAGPWLVDGNRFATKIKSASSASNHERVAWKSDPCKTCPNCHHVIDNSDVVQEWPGLPRGVKFDPSDQEIIWHLLAKAGNGGIKSHPFIKEFIPTVENDD GICYTHPKNLPGVKQDGSISHFFHRAIKAYNTGTRKRRKIQGDDSGDVRWHKTGRTKPVILDGVQKGCKKIMVLYTSTVRGGKAEKTNWVMHQYHLGTGE DERDGEYVVSKVFYQQQAANKGEKTEEDLSEIANAVVAKVDPVTPKSVTPDPPRAERRCQDFDLGKESTNVCTEPYAEHPGVENLEEANLQHESPCYNDQ PGMENHVDQMVGDNDNCAEEGTKWWDSESQHLLDSQQLVEGLSLCDEFLQSQSPSRGGHGTGASGKSGLSDYARLGPEHLKKDLEECQNLELDPANIELD TPPEFRLSQLEFGSQDSFMAWGEGRVAD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G25580	NAC	ANAC008, SOG1	SUPPRESSOR OF GAMMA RADIATION ...		Potri.008G116600 [exp]	0	1
AT1G25580	NAC	ANAC008, SOG1	SUPPRESSOR OF GAMMA RADIATION ...		Potri.010G129700 [exp]	2.23	0.7525
AT2G26300		ATGPA1, GPALPHA...	ARABIDOPSIS THALIANA G PROTEIN...		Potri.018G048600 [exp]	21.40	0.7699	Pt-GPA1.1
AT5G10080			Eukaryotic aspartyl protease f...		Potri.005G079900 [exp]	26.88	0.7566
AT2G22600			RNA-binding KH domain-containi...		Potri.007G012000 [exp]	29.47	0.7408
AT1G26880			Ribosomal protein L34e superfa...		Potri.015G106532 [exp]	32.18	0.7528
AT1G73320			S-adenosyl-L-methionine-depend...		Potri.017G153900 [exp]	37.01	0.7418
AT2G38120		MAP1, WAV5, PIR...	WAVY ROOTS 5, MODIFIER OF ARF7...		Potri.010G191000 [exp]	42.24	0.6839	PtrAUX3,Pt-LAX1.2
AT1G23380	HD	KNAT6S, KNAT6L,...	KNOTTED1-like homeobox gene 6 ...		Potri.013G008600 [exp]	55.64	0.7281
AT4G23650		CDPK6, CPK3	Calcium dependent protein kina...		Potri.001G097400 [exp]	66.79	0.7203	CPK3,CDPK5.4
AT4G33280	B3	REM16	AP2/B3-like transcriptional fa...		Potri.002G129800 [exp]	73.83	0.6909

Compare expression of checked genes

Potri.008G116600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.