Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68830 884 / 0 STN7 STT7 homolog STN7 (.1) AT5G01920 259 / 1e-79 STN8 State transition 8, Protein kinase superfamily protein (.1) AT2G38620 70 / 6e-13 CDKB1;2 cyclin-dependent kinase B1;2 (.1.2) AT3G54180 69 / 2e-12 CDC2B, CDKB1;1 CDC2-LIKE GENE, cyclin-dependent kinase B1;1 (.1) AT1G76540 66 / 2e-11 CDKB2;1 cyclin-dependent kinase B2;1 (.1) AT5G53450 64 / 2e-10 ORG1 OBP3-responsive gene 1 (.1.2) AT1G20930 62 / 2e-10 CDKB2;2 cyclin-dependent kinase B2;2 (.1) AT3G48750 59 / 3e-09 CDKA1, CDC2A, CDKA;1, CDC2AAT, CDK2 cell division control 2 (.1) AT4G09570 56 / 4e-08 CPK4, ATCPK4 calcium-dependent protein kinase 4 (.1) AT1G50240 54 / 2e-07 FU FUSED, Protein kinase family protein with ARM repeat domain (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G129532 [exp] 301 / 6e-100 AT1G68830 296 / 1e-98 STT7 homolog STN7 (.1) Potri.010G129466 [exp] 287 / 6e-95 AT1G68830 207 / 9e-65 STT7 homolog STN7 (.1) Potri.016G138500 [exp] 265 / 1e-81 AT5G01920 596 / 0.0 State transition 8, Protein kinase superfamily protein (.1) Potri.006G109700 [exp] 261 / 2e-80 AT5G01920 597 / 0.0 State transition 8, Protein kinase superfamily protein (.1) Potri.015G017100 [exp] 67 / 1e-11 AT5G53450 890 / 0.0 OBP3-responsive gene 1 (.1.2) Potri.002G003400 [exp] 66 / 1e-11 AT1G76540 553 / 0.0 cyclin-dependent kinase B2;1 (.1) Potri.005G257500 [exp] 65 / 3e-11 AT1G76540 552 / 0.0 cyclin-dependent kinase B2;1 (.1) Potri.006G113200 [exp] 65 / 4e-11 AT2G38620 545 / 0.0 cyclin-dependent kinase B1;2 (.1.2) Potri.016G142800 [exp] 64 / 6e-11 AT2G38620 536 / 0.0 cyclin-dependent kinase B1;2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034273 [exp] 822 / 0 AT1G68830 832 / 0.0 STT7 homolog STN7 (.1) Lus10041490 [exp] 755 / 0 AT1G68830 754 / 0.0 STT7 homolog STN7 (.1) Lus10014183 [exp] 258 / 3e-79 AT5G01920 651 / 0.0 State transition 8, Protein kinase superfamily protein (.1) Lus10022730 [exp] 221 / 1e-65 AT5G01920 530 / 0.0 State transition 8, Protein kinase superfamily protein (.1) Lus10038813 [exp] 75 / 7e-14 AT5G53450 817 / 0.0 OBP3-responsive gene 1 (.1.2) Lus10021611 [exp] 66 / 3e-11 AT1G76540 531 / 0.0 cyclin-dependent kinase B2;1 (.1) Lus10040593 [exp] 66 / 3e-11 AT1G76540 534 / 0.0 cyclin-dependent kinase B2;1 (.1) Lus10009427 [exp] 56 / 9e-08 AT4G09570 792 / 0.0 calcium-dependent protein kinase 4 (.1) Lus10028163 [exp] 56 / 1e-07 AT1G53165 769 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10029346 [exp] 54 / 2e-07 AT2G38910 834 / 0.0 calcium-dependent protein kinase 20 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.008G116800.1 pacid=42806157 polypeptide=Potri.008G116800.1.p locus=Potri.008G116800 ID=Potri.008G116800.1.v4.1 annot-version=v4.1 ATGGCCACTGTGGCATCAGGAGGTACAATACCTATCAAACTCCACAGCACTCACAGACCAAAACCCCCATCTCCATTTCTTGGAAGAAAACTCAATCTCA ATCCCTCTTCAAGAACATCCATAGCCACCTTACACCCCAAAACACTTGCAGTTGTTGCATCATCAGGAGGTGAGTTCTTCGATGCAGTTCACAATCTCTT TTTGGGTGTAGGAGTAGGGCTACCATGTACAGTGATGGAGTGTGGTGATATAATATATAGAAGCACTTTGCCAAAGCCCAGTGGGTTGACGCTTACTGTT CCTGGCGCTGCTTTGGCTTTGGGTACTTTGTCTTACCTCTGGGCCACTCCCGGTGTGGCTCCTGGGTTCTTTGACATGTTTTTTCTTGCTTTTGTTGAGA GATTGTTTAGGCCCACTTTTAAGAAGGATGACTTTGTTTTGGGGAAGAAGTTGGGCGAGGGAGCTTTTGGAGTGGTTTATAGAGCTTCATTGACGAAGAA GCCTTCTTCCAAGGTGCCTTATCAGAAGGAAGGTGACTTAGTATTGAAAAAGGCTACTGAATACGGGGCAGTGGAAATTTGGATGAATGAACGAGTTCGA AGAGCTTGTGCAAACAGCTGTGCTGATTTTGTGCATGGATTTCTTGAGAATTCTTCAAAGAAAGGAGCTGAATATTGGCTCATATGGCGGTATGAAGGGG AGGCCACACTTTATGATTTGATGCAGAGCAAAGAGTTCCCCTACAATGTTGAGACAATGATAGTCAAAGAGGTACAGGACTTGCCTAGGGGGCTGGAGAG GGAAAACAGAATCATTCAAACTATCATGAGACAACTTTTATTTGCGCTGGATGGCCTTCACTCGACAGGAATTGTGCATAGGGATATTAAACCACAGAAT ATTATTTTCTCTGAAGGATCTCGTACATTCAAAATCATTGATCTTGGAGCAGCAGCAGATTTGCGAGTGGGAATCAATTATATTCCAAAGGAATTTCTTT TGGACCCAAGATATGCAGCGCCAGAGCAATATATCATGAGCACGCAAACTCCATCTGCGCCCTCAGCTCCTGTGGCAACTGCACTTTCCCCAGTGCTTTG GCAGATGAACTTGCCAGATAGATTTGATATTTACAGCACTGGTTTAATCTTCCTGCAAATGGCTTTTTCAGGACTACGATCTGATAGTGCACTCATACAG TTTAACCGTCAATTAAAACGATGCGATTATGACTTAAATGCATGGAGGAAAAGCGTAGAGCCACGTGCCAGCTCTGACCTTCGAAAGGGTTTTGAGTTAT TGGATTTAGATGGTGGGATAGGATGGGAGCTTCTTACTTCAATGGTTCGATATAAAGCAGGACAAAGAATAAGTGCAAAGGGAGGTTTAGCTAACCCTTA CTTCGATAGGGAAGGACTATTAGTTTTGTCCCTCATGCAGAATCTCAGGCTGCAATTGTTTCGAGCAACACAACAGGATTATGGAGAAGCTGCCGAATGG GTTATTCAGCTAATGGCAAAATCTGGAACAGAGAAGGAGGGTGGCTTCACAGAAGCTCAACTTCAAGATCTGAGAGAAAGACAAGAGCCTAAAAAGAAGG CAAGCCCTCAAAGGAATGCTCTTGCGTCAGTACTTCGGCTCCAAAGGAAGATTATGAAAACAGTGAACGAGAGCGTGGACGAGCTTTACAGACGAAGGAA GAGCCTATGGTGGAGCCGATGGATCCCCAGAGAGGAATGA
AA sequence Show only first row Show all	>Potri.008G116800.1 pacid=42806157 polypeptide=Potri.008G116800.1.p locus=Potri.008G116800 ID=Potri.008G116800.1.v4.1 annot-version=v4.1 MATVASGGTIPIKLHSTHRPKPPSPFLGRKLNLNPSSRTSIATLHPKTLAVVASSGGEFFDAVHNLFLGVGVGLPCTVMECGDIIYRSTLPKPSGLTLTV PGAALALGTLSYLWATPGVAPGFFDMFFLAFVERLFRPTFKKDDFVLGKKLGEGAFGVVYRASLTKKPSSKVPYQKEGDLVLKKATEYGAVEIWMNERVR RACANSCADFVHGFLENSSKKGAEYWLIWRYEGEATLYDLMQSKEFPYNVETMIVKEVQDLPRGLERENRIIQTIMRQLLFALDGLHSTGIVHRDIKPQN IIFSEGSRTFKIIDLGAAADLRVGINYIPKEFLLDPRYAAPEQYIMSTQTPSAPSAPVATALSPVLWQMNLPDRFDIYSTGLIFLQMAFSGLRSDSALIQ FNRQLKRCDYDLNAWRKSVEPRASSDLRKGFELLDLDGGIGWELLTSMVRYKAGQRISAKGGLANPYFDREGLLVLSLMQNLRLQLFRATQQDYGEAAEW VIQLMAKSGTEKEGGFTEAQLQDLRERQEPKKKASPQRNALASVLRLQRKIMKTVNESVDELYRRRKSLWWSRWIPREE

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G68830		STN7	STT7 homolog STN7 (.1)		Potri.008G116800 [exp]	0	1
AT1G09130			ATP-dependent caseinolytic (Cl...		Potri.013G017166 [exp]	1.00	0.9889
AT2G28800		ABL3, ALB3	ALBINO 3, 63 kDa inner membran...		Potri.001G237800 [exp]	1.41	0.9882	ALB3.2
AT2G46100			Nuclear transport factor 2 (NT...		Potri.002G162800 [exp]	1.73	0.9874
AT3G63490		EMB3126	EMBRYO DEFECTIVE 3126, Ribosom...		Potri.001G262400 [exp]	4.47	0.9843	RPL1.2
AT5G46420			16S rRNA processing protein Ri...		Potri.001G353800 [exp]	5.47	0.9791
AT3G63520		ATNCED1, ATCCD1...	carotenoid cleavage dioxygenas...		Potri.009G060500 [exp]	5.91	0.9770	CCD1.5
AT5G13720			Uncharacterised protein family...		Potri.009G057300 [exp]	6.63	0.9739
AT5G22620			phosphoglycerate/bisphosphogly...		Potri.004G187700 [exp]	6.70	0.9793
AT1G10830		Z-ISO1.2, Z-ISO...	15-cis-zeta-carotene isomerase...		Potri.014G146900 [exp]	8.48	0.9726
AT3G55400		OVA1	OVULE ABORTION 1, methionyl-tR...		Potri.010G207300 [exp]	8.94	0.9768

Compare expression of checked genes

Potri.008G116800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.