Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13250 509 / 0 GATL3 galacturonosyltransferase-like 3 (.1) AT3G06260 434 / 4e-153 GolS9, GATL4 galactinol synthase 9, galacturonosyltransferase-like 4 (.1) AT4G02130 421 / 7e-148 GATL6, LGT10 galacturonosyltransferase 6 (.1.2.3) AT1G24170 416 / 2e-145 GATL8, LGT9 GALACTURONOSYLTRANSFERASE-LIKE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT1G70090 411 / 2e-143 GATL9, LGT8 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) AT3G62660 409 / 5e-143 GATL7 galacturonosyltransferase-like 7 (.1) AT1G02720 408 / 1e-142 GATL5 galacturonosyltransferase 5 (.1.2) AT1G19300 394 / 2e-137 ATGATL1, GATL1, PARVUS, GLZ1 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT3G28340 393 / 7e-137 GolS8, GATL10 galactinol synthase 8, galacturonosyltransferase-like 10 (.1) AT3G50760 388 / 5e-135 GATL2 galacturonosyltransferase-like 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G129400 [exp] 624 / 0 AT1G13250 521 / 0.0 galacturonosyltransferase-like 3 (.1) Potri.008G018100 [exp] 435 / 1e-153 AT3G06260 533 / 0.0 galactinol synthase 9, galacturonosyltransferase-like 4 (.1) Potri.014G040300 [exp] 414 / 6e-145 AT1G19300 489 / 1e-174 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.010G242300 [exp] 411 / 5e-144 AT3G06260 524 / 0.0 galactinol synthase 9, galacturonosyltransferase-like 4 (.1) Potri.010G038300 [exp] 412 / 7e-144 AT1G70090 580 / 0.0 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) Potri.002G200200 [exp] 408 / 1e-142 AT3G62660 593 / 0.0 galacturonosyltransferase-like 7 (.1) Potri.007G031700 [exp] 404 / 2e-141 AT3G50760 459 / 5e-163 galacturonosyltransferase-like 2 (.1) Potri.014G125000 [exp] 403 / 1e-140 AT3G62660 596 / 0.0 galacturonosyltransferase-like 7 (.1) Potri.002G132900 [exp] 400 / 8e-140 AT1G19300 483 / 2e-172 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041489 [exp] 541 / 0 AT1G13250 491 / 2e-175 galacturonosyltransferase-like 3 (.1) Lus10034274 [exp] 539 / 0 AT1G13250 489 / 9e-175 galacturonosyltransferase-like 3 (.1) Lus10034012 [exp] 438 / 1e-154 AT3G06260 522 / 0.0 galactinol synthase 9, galacturonosyltransferase-like 4 (.1) Lus10012765 [exp] 437 / 3e-154 AT3G06260 519 / 0.0 galactinol synthase 9, galacturonosyltransferase-like 4 (.1) Lus10002440 [exp] 420 / 2e-146 AT3G62660 597 / 0.0 galacturonosyltransferase-like 7 (.1) Lus10010727 [exp] 406 / 6e-142 AT1G70090 546 / 0.0 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) Lus10016301 [exp] 405 / 1e-141 AT1G19300 506 / 0.0 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10032728 [exp] 400 / 8e-140 AT1G19300 515 / 0.0 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10018801 [exp] 399 / 2e-139 AT1G19300 518 / 0.0 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10030821 [exp] 399 / 1e-138 AT1G70090 533 / 0.0 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF01501 [poplar] [flax] Glyco_transf_8 Glycosyl transferase family 8
Representative CDS sequence Show only first row Show all	>Potri.008G116900.1 pacid=42807396 polypeptide=Potri.008G116900.1.p locus=Potri.008G116900 ID=Potri.008G116900.1.v4.1 annot-version=v4.1 ATGTCAATCCTCTGCATTTTTCTATTTCTAACCACCGTCGTCGTCTCCGTACAGAGCTTACCTAACGCAGAACTTCCTGCGTTTAGAGAAGCACCGGCAT TTCGAAACGGCAGAGAATGTCCCAAAAAGACATGGCCTTCATCATTCAACAACCTCAACCACCACCGCCACGATCCTTCTATAATTCACATCGCAATGAC ACTCGATGCCACCTACCTCCGTGGCTCCGTAGCCGGAGTCCTCTCCGTCCTCCAACACGCCGCCTGTCCTGAACACATAGTCTTCCACTTCATCGCCACT CACCGCCGAGCCGACCTCCGACGCACAATCACCTCCACATTCCCTTACCTAACCTTCCATCTCTACCATTTCAACACTGATCTGGTCAGAGGAAAGATCT CCTCCTCCATTCGCCGAGCTCTGGATCAACCGTTGAATTACGCGCGAATCTACCTCGCCGACCTCTTACCGTTCACAGTGAGGAGAATCATCTACTTCGA TTCTGATTTAATCGTGGTCGATGACGTGGCAAAATTATGGAACATCAATCTAGGTGCACACGTACTTGGCGCACCAGAATATTGCCATGTTAATTTTTCT TATTATTTTAACTCTCGGTTTTGGTCGAGTCCAGTGTATGCGACATCGTTTACGGGGAGGAGAGCGTGCTATTTTAACACGGGGGTGATGGTGATAGATT TGAGAAAATGGAGAGAAGGGAAATACACTGAAAAATTAGAGTACTGGATGAGAGTACAGAAGAAGAATAGGATTTACGAGTTGGGTTCATTGCCTCCTTT TTTGCTTGTTTTCGCCGGCGACGTGGAGGGCGTCGAGCATAGATGGAATCAACATGGGCTTGGGGGCGATAATCTTGAAGGGCTGTGCAGGGATTTGCAT CCCGGTCCGGTAAGTTTGTTACATTGGAGTGGTAAGGGCAAGCCTTGGCTCAGGTTGAACTCTAAAAGACCGTGTCCGTTGGATTCTTTGTGGGCACCTT ATGATCTTTATCGTCATCCCACCTTGTTTTGTGATACCTAG
AA sequence Show only first row Show all	>Potri.008G116900.1 pacid=42807396 polypeptide=Potri.008G116900.1.p locus=Potri.008G116900 ID=Potri.008G116900.1.v4.1 annot-version=v4.1 MSILCIFLFLTTVVVSVQSLPNAELPAFREAPAFRNGRECPKKTWPSSFNNLNHHRHDPSIIHIAMTLDATYLRGSVAGVLSVLQHAACPEHIVFHFIAT HRRADLRRTITSTFPYLTFHLYHFNTDLVRGKISSSIRRALDQPLNYARIYLADLLPFTVRRIIYFDSDLIVVDDVAKLWNINLGAHVLGAPEYCHVNFS YYFNSRFWSSPVYATSFTGRRACYFNTGVMVIDLRKWREGKYTEKLEYWMRVQKKNRIYELGSLPPFLLVFAGDVEGVEHRWNQHGLGGDNLEGLCRDLH PGPVSLLHWSGKGKPWLRLNSKRPCPLDSLWAPYDLYRHPTLFCDT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G13250		GATL3	galacturonosyltransferase-like...		Potri.008G116900 [exp]	0	1
AT5G25170			PPPDE putative thiol peptidase...		Potri.018G021700 [exp]	1.73	0.8704
AT2G35060		KUP11	K+ uptake permease 11, K+ upta...		Potri.001G123700 [exp]	3.00	0.8889	Pt-KUP10.1
AT5G55650			unknown protein		Potri.001G367100 [exp]	4.47	0.8676
AT1G61900			unknown protein		Potri.004G016000 [exp]	6.70	0.8621
AT4G08980		FBW2	F-BOX WITH WD-40 2 (.1.2.3.4.5...		Potri.002G099100 [exp]	8.94	0.8438
AT1G20870			HSP20-like chaperones superfam...		Potri.002G005400 [exp]	9.79	0.8567
AT4G39630			unknown protein		Potri.005G082500 [exp]	13.19	0.8588
AT3G07880		SCN1	SUPERCENTIPEDE1, Immunoglobuli...		Potri.002G259200 [exp]	13.78	0.8491
AT5G13260			unknown protein		Potri.003G164100 [exp]	14.62	0.8710
AT4G16710			glycosyltransferase family pro...		Potri.013G025600 [exp]	18.89	0.8585

Compare expression of checked genes

Potri.008G116900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.