Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G25570 815 / 0 Di-glucose binding protein with Leucine-rich repeat domain (.1) AT1G28340 263 / 4e-79 AtRLP4 receptor like protein 4 (.1) AT2G28960 131 / 1e-31 Leucine-rich repeat protein kinase family protein (.1) AT3G19230 127 / 7e-31 Leucine-rich repeat (LRR) family protein (.1) AT2G14440 119 / 1e-27 Leucine-rich repeat protein kinase family protein (.1) AT3G46400 117 / 3e-27 Leucine-rich repeat protein kinase family protein (.1) AT2G28990 117 / 3e-27 Leucine-rich repeat protein kinase family protein (.1) AT4G29990 115 / 2e-26 Leucine-rich repeat transmembrane protein kinase protein (.1) AT1G51800 112 / 1e-25 IOS1 IMPAIRED OOMYCETE SUSCEPTIBILITY 1, Leucine-rich repeat protein kinase family protein (.1) AT1G51910 111 / 4e-25 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G129300 [exp] 1051 / 0 AT1G25570 852 / 0.0 Di-glucose binding protein with Leucine-rich repeat domain (.1) Potri.011G056800 [exp] 284 / 3e-87 AT1G28340 931 / 0.0 receptor like protein 4 (.1) Potri.004G047300 [exp] 278 / 6e-85 AT1G28340 928 / 0.0 receptor like protein 4 (.1) Potri.009G102300 [exp] 116 / 2e-27 AT3G19230 595 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.006G132100 [exp] 109 / 2e-24 AT2G37050 1317 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Potri.019G094700 [exp] 108 / 3e-24 AT4G29990 652 / 0.0 Leucine-rich repeat transmembrane protein kinase protein (.1) Potri.002G242700 [exp] 106 / 9e-24 AT5G48740 1110 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G052800 [exp] 100 / 7e-22 AT1G67720 1330 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G150200 [exp] 99 / 9e-22 AT3G05990 634 / 0.0 Leucine-rich repeat (LRR) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041488 [exp] 909 / 0 AT1G25570 880 / 0.0 Di-glucose binding protein with Leucine-rich repeat domain (.1) Lus10034275 [exp] 888 / 0 AT1G25570 874 / 0.0 Di-glucose binding protein with Leucine-rich repeat domain (.1) Lus10015417 [exp] 269 / 1e-80 AT1G28340 902 / 0.0 receptor like protein 4 (.1) Lus10013994 [exp] 265 / 5e-80 AT1G28340 908 / 0.0 receptor like protein 4 (.1) Lus10015320 [exp] 253 / 1e-75 AT1G28340 895 / 0.0 receptor like protein 4 (.1) Lus10025849 [exp] 113 / 7e-26 AT4G29990 803 / 0.0 Leucine-rich repeat transmembrane protein kinase protein (.1) Lus10025926 [exp] 109 / 1e-24 AT5G48740 1094 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10036935 [exp] 102 / 4e-22 AT1G67720 1303 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10015057 [exp] 101 / 6e-22 AT2G37050 1316 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Lus10019907 [exp] 100 / 1e-21 AT2G37050 1337 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0202 [poplar] [flax] GBD PF11721 [poplar] [flax] Malectin Malectin domain
Representative CDS sequence Show only first row Show all	>Potri.008G117000.1 pacid=42806849 polypeptide=Potri.008G117000.1.p locus=Potri.008G117000 ID=Potri.008G117000.1.v4.1 annot-version=v4.1 ATGTCTGTTCTCTTCTTCCTCTTCTCTCTCCCTCTCCTCCTCTCCCCTTCCCTCTCCCTCCACTTTGGCAATACTTCATACTTCATAGACTGTGGCGGTT CCACAAACACAACCGATCCATTCAACACGACATGGCTGTCCGACCGTTACTTCACAGGCGGAGCTACCTCTGTAGTGTCAGAGCCACTCCACTTCCTCTA CCCTCAAGAAAAAAATCTCCGATTCTTCCCTCTCTCCTCCGGCAAAAAAAACTGCTACGTTCTCCCTCTCCCTAACGGCCGTTACTACTTCCGTACATTC ACTGTATACGACAACTACGACGGAAAATCTAACCCTCCTTCATTCGACGCATCTGTCGAGGGTACTCTCGTCTTTTCCTGGCGTTCTCCTTGGCCTGAGA ATCTCGCTCGTGACGGCGCGTACTCCGATCTCTTCGCGTTTGTTAAAGACGGTGAAGCGGATGTTTGTTTTTACAGTATTGCCACTGACCCTCCTGTCAT TGGATCCCTCGAAATCCGTCAAATCGATCCCTTATCTTACGGTTCGTCAACAATCGGCGATAAATTCACCCTCGTTAATTACGGCCGTTTATCCTGTGGG TCCACACAGTGGGGCCCGGGGTTTAGCAACGACACAGATGATTTTGGCCGAACATGGCAGTCCGACTCCGAGTTCCAAACTCCAAACACGACAAAAATAA TCCACTCCATCTCCACCCGAGAAACCATAACCGGCACCATTCAGCCGCCTAATTATTTTCCGATGAAGCTTTACCAAACGGCGGTAACTGGAGATGGAAC ACTGGAGTATGCAGTATCAGTCGATGCGAAAATGGATTATTTGTTGTGGTTTCATTTCGCGGAGATTGATTCAAGTGTGAAGCAGAAATCGGAGAGAGTG TTTGATGTGGTGGTGAATGAGAAGAATGTGGAGAGGGTGGACGTTTTCGAGGAAGTTGGGAGTTTTGCAGCTTATAGTTGGAGTTACACAGTGCATAATT TGAGCAGTACTGTGTTGACTCTGAAGTTTGTGCCGGTTGTGGGCGCACCGATAATTAGTGGCATTGAGATTTATGCTTTGGTTCCTAATGATCTCTCAAC CATGCCCGAGCAAGTGGTGGCAATGAGAGCGTTGAAAGAGTCGTTACGGGTTCCTGATAGAATGGGATGGAATGGGGATCCTTGTGCTCCTACTAGCTGG GATGCTTGGGAAGGAGTTACATGCCATCCCAACAAAGACGAGACTGCACTTGTGATATCACAAATTGATCTTGGAAGTCAAGGCTTGAAAGGCAGTATAA GTGAGCAGATTACTCTTTTGTCGGACTTGTTAAGCCTGAATTTGAGTACTAATTCTTTGGGAGGAACTCTACCATCAGGATTAGGTCAACAATCTCTTGT CCGGCTGGATTTGTCCAACAATCAGTTCTCGGGCCCTATACCAGAAAGTTTAGCCTCGGCAATTCATCTGCAGCTTGTGCTGTTGAATGGTAACTTATTG GAAGGGCGAGTACCAGAGGAACTTTATTCAATTGGTGTGCATGGTGGAGCTATTGATCTCTCAGGTAACAAAGGCTTGTGTGGTGTACCATCTTTGCCAC AATGCTCTCTATTATGGGAAAATGGTCGCTTGTCCACTGGTGGTAAAATTGGGATAGGCTTATCCTGCCTGGTAATTGTTTCTGTGCTTGTATTGGGATA CATAATCTGCATCAGGAGGCGTCGAAATGATTACGACTTTGCTCCACCTCACGATCTAATGTCAATGGCTGCCAAGAGAAACAGATACCAGAGGCAGAAG TCCTTGATGCTTCTTGAAATGGAGAGCCAACATGCCAAAGGGTTACCATCACCTTATGGTCCACATTAA
AA sequence Show only first row Show all	>Potri.008G117000.1 pacid=42806849 polypeptide=Potri.008G117000.1.p locus=Potri.008G117000 ID=Potri.008G117000.1.v4.1 annot-version=v4.1 MSVLFFLFSLPLLLSPSLSLHFGNTSYFIDCGGSTNTTDPFNTTWLSDRYFTGGATSVVSEPLHFLYPQEKNLRFFPLSSGKKNCYVLPLPNGRYYFRTF TVYDNYDGKSNPPSFDASVEGTLVFSWRSPWPENLARDGAYSDLFAFVKDGEADVCFYSIATDPPVIGSLEIRQIDPLSYGSSTIGDKFTLVNYGRLSCG STQWGPGFSNDTDDFGRTWQSDSEFQTPNTTKIIHSISTRETITGTIQPPNYFPMKLYQTAVTGDGTLEYAVSVDAKMDYLLWFHFAEIDSSVKQKSERV FDVVVNEKNVERVDVFEEVGSFAAYSWSYTVHNLSSTVLTLKFVPVVGAPIISGIEIYALVPNDLSTMPEQVVAMRALKESLRVPDRMGWNGDPCAPTSW DAWEGVTCHPNKDETALVISQIDLGSQGLKGSISEQITLLSDLLSLNLSTNSLGGTLPSGLGQQSLVRLDLSNNQFSGPIPESLASAIHLQLVLLNGNLL EGRVPEELYSIGVHGGAIDLSGNKGLCGVPSLPQCSLLWENGRLSTGGKIGIGLSCLVIVSVLVLGYIICIRRRRNDYDFAPPHDLMSMAAKRNRYQRQK SLMLLEMESQHAKGLPSPYGPH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G25570			Di-glucose binding protein wit...		Potri.008G117000 [exp]	0	1
AT3G53440			Homeodomain-like superfamily p...		Potri.018G000700 [exp]	9.16	0.6314
AT5G49110			unknown protein		Potri.010G011800 [exp]	14.73	0.7026
AT5G19330		ARIA	ARM repeat protein interacting...		Potri.002G052700 [exp]	28.91	0.6455
AT3G21430	MYB	ATALY3	ARABIDOPSIS THALIANA ALWAYS EA...		Potri.008G216600 [exp]	33.57	0.6347
AT5G17020		HIT2, ATXPO1, A...	HEAT-INTOLERANT 2, ARABIDOPSIS...		Potri.019G052100 [exp]	38.97	0.6308	Pt-XPO1.1
AT5G07810			SNF2 domain-containing protein...		Potri.012G067000 [exp]	51.62	0.6436	CHR919
AT2G46920		POL	poltergeist, Protein phosphata...		Potri.002G185000 [exp]	61.15	0.6164	POL.2
AT2G14120		DRP3B	dynamin related protein (.1.2....		Potri.012G125300 [exp]	67.88	0.6341
AT1G79570			Protein kinase superfamily pro...		Potri.005G095200 [exp]	68.13	0.5409
AT5G19820		EMB2734	embryo defective 2734, ARM rep...		Potri.001G004800 [exp]	71.30	0.6161

Compare expression of checked genes

Potri.008G117000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.