Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13270 531 / 0 MAP1B, MAP1C methionine aminopeptidase 1B (.1.2) AT3G25740 449 / 4e-159 MAP1C, MAP1B methionine aminopeptidase 1C (.1) AT4G37040 389 / 3e-135 MAP1D methionine aminopeptidase 1D (.1) AT2G45240 281 / 5e-92 MAP1A methionine aminopeptidase 1A (.1) AT1G09300 50 / 1e-06 Metallopeptidase M24 family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G137400 [exp] 397 / 2e-138 AT4G37040 539 / 0.0 methionine aminopeptidase 1D (.1) Potri.014G067300 [exp] 272 / 2e-88 AT2G45240 673 / 0.0 methionine aminopeptidase 1A (.1) Potri.010G129101 [exp] 83 / 3e-19 AT1G13270 54 / 1e-09 methionine aminopeptidase 1B (.1.2) Potri.013G007100 [exp] 55 / 6e-08 AT1G09300 643 / 0.0 Metallopeptidase M24 family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021701 [exp] 549 / 0 AT1G13270 518 / 0.0 methionine aminopeptidase 1B (.1.2) Lus10035045 [exp] 501 / 2e-179 AT1G13270 466 / 3e-165 methionine aminopeptidase 1B (.1.2) Lus10011514 [exp] 383 / 8e-124 AT2G23140 916 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10019308 [exp] 375 / 1e-120 AT2G23140 911 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10021657 [exp] 272 / 2e-88 AT2G45240 696 / 0.0 methionine aminopeptidase 1A (.1) Lus10001650 [exp] 241 / 1e-76 AT2G45240 637 / 0.0 methionine aminopeptidase 1A (.1) Lus10010905 [exp] 48 / 1e-05 AT1G09300 642 / 0.0 Metallopeptidase M24 family protein (.1.2) Lus10031427 [exp] 47 / 2e-05 AT1G09300 637 / 0.0 Metallopeptidase M24 family protein (.1.2) Lus10003379 [exp] 43 / 0.0003 AT3G51800 597 / 0.0 A. THALIANA ERBB-3 BINDING PROTEIN 1, metallopeptidase M24 family protein (.1.2.3) Lus10002851 [exp] 42 / 0.0007 AT3G51800 595 / 0.0 A. THALIANA ERBB-3 BINDING PROTEIN 1, metallopeptidase M24 family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00557 [poplar] [flax] Peptidase_M24 Metallopeptidase family M24
Representative CDS sequence Show only first row Show all	>Potri.008G117200.1 pacid=42808484 polypeptide=Potri.008G117200.1.p locus=Potri.008G117200 ID=Potri.008G117200.1.v4.1 annot-version=v4.1 ATGGGTTTTGCTGCTTCAATGTCTTCCCCTCCTCCTCCTCTGCAACTTTCCTCCTCCTCCTCCTCATCATCATCATGGTCAAAGTCAGCTCTTTTCAGCG TGACCCCAGTTTCCTTTTCTCCTCCAACTGGAAAAAATGCACAGTATCGTAAACGACTCGTCGTATTGTCAAAGAGAGTTTCACCTCTAGAAGAGGGCAT GAGAATCAGGAGAGAACGAGAGCTTCAAAAGACGGTTAAGTTTAGAAAAAGGCCACCATTGAGGCGGGGGAGAGTATCGCCAAGGTTGCCAGTGCCCGAT GATATTCCAAAGCCTCCATATTTAGGTTCAAATGAGTTGCCAGATATTTCTAGTGAGCATCAGATTCATGACTCTGAAGGGATTGTTAAAATGAGGGCAG CCTGCGAGCTTGCTGCTCGCGTTTTGGATAATGCTGGCAAATTGGTTAGGCCATCAGTGACAACAAATGAGATTGACAAAGCAGTGCACCAGATGATCAT TGATGCTGGTGCTTATCCTTCACCTCTTGGTTATGGAGGATTCCCAAAGAGTGTGTGTACATCAGTTAACGAGTGCATGTGTCATGGAATACCTGACTCT CGTCAGCTGCAGGATGGTGACATAATAAATATTGATGTGACGGTCTACTTAAATGGCTATCATGGAGACACTTCAAAAACATTTCTGTGTGGGAATGTCA ATGATGCTCTTATGCGTCTCGTGAAGGTGACTGAGGAGTGTTTGGAAAGAGGGATAGCTCTATGTAAAGATGGTGCTAGTTTCAAGAAAATCGGAAAGAG AATTAGTGAGCATGCTGAAAAATATGGTTATGGTGTGGTGGAGCGTTTTGTTGGACATGGTGTAGGGACTGTATTTCATTCTGAACCATTAATACTACAT AATCGCAATGACAGGCCTGGCATCATGGTTGAAGGTGAAACTTTTACCATTGAACCAATACTTACAATAGGAAGCACTGAGTGCATAACGTGGCCTGACA ACTGGACAACTTTGACAGCTGATGGTAGTCCTGCAGCACAATTTGAGCATACCATTTTAATTACTAGAACTGGTGCGGAAATTTTGACAAAGTGTTAA
AA sequence Show only first row Show all	>Potri.008G117200.1 pacid=42808484 polypeptide=Potri.008G117200.1.p locus=Potri.008G117200 ID=Potri.008G117200.1.v4.1 annot-version=v4.1 MGFAASMSSPPPPLQLSSSSSSSSSWSKSALFSVTPVSFSPPTGKNAQYRKRLVVLSKRVSPLEEGMRIRRERELQKTVKFRKRPPLRRGRVSPRLPVPD DIPKPPYLGSNELPDISSEHQIHDSEGIVKMRAACELAARVLDNAGKLVRPSVTTNEIDKAVHQMIIDAGAYPSPLGYGGFPKSVCTSVNECMCHGIPDS RQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVNDALMRLVKVTEECLERGIALCKDGASFKKIGKRISEHAEKYGYGVVERFVGHGVGTVFHSEPLILH NRNDRPGIMVEGETFTIEPILTIGSTECITWPDNWTTLTADGSPAAQFEHTILITRTGAEILTKC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G13270		MAP1B, MAP1C	methionine aminopeptidase 1B (...		Potri.008G117200 [exp]	0	1
AT5G20140			SOUL heme-binding family prote...		Potri.018G073501 [exp]	2.44	0.9872
AT3G09050			unknown protein		Potri.006G096700 [exp]	2.82	0.9841
AT3G51820		PDE325, ATG4, G...	PIGMENT DEFECTIVE 325, UbiA pr...		Potri.006G102100 [exp]	3.00	0.9844
AT3G04650			FAD/NAD(P)-binding oxidoreduct...		Potri.005G055800 [exp]	5.47	0.9797
AT1G31800		CYP97A3, LUT5	LUTEIN DEFICIENT 5, "cytochrom...		Potri.013G088100 [exp]	5.47	0.9780
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Potri.001G005900 [exp]	6.32	0.9826
AT3G07670			Rubisco methyltransferase fami...		Potri.014G169300 [exp]	6.92	0.9793
AT5G39830		DEG8, DEGP8	DEG PROTEASE 8, Trypsin family...		Potri.004G129200 [exp]	6.92	0.9730
AT4G17040		HON5, CLPR4	happy on norflurazon 5, CLP pr...		Potri.003G083300 [exp]	7.41	0.9779
AT2G28800		ABL3, ALB3	ALBINO 3, 63 kDa inner membran...		Potri.001G237800 [exp]	7.48	0.9795	ALB3.2

Compare expression of checked genes

Potri.008G117200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.