Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25780 275 / 3e-93 AOC3, AOC2 allene oxide cyclase 3 (.1) AT1G13280 264 / 4e-89 AOC4 allene oxide cyclase 4 (.1) AT3G25770 258 / 2e-86 AOC2, AOC3 allene oxide cyclase 2 (.1) AT3G25760 256 / 1e-85 AOC1, ERD12 early-responsive to dehydration 12, allene oxide cyclase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G102500 [exp] 302 / 4e-104 AT3G25780 261 / 6e-88 allene oxide cyclase 3 (.1) Potri.017G112400 [exp] 209 / 5e-69 AT3G25780 172 / 1e-54 allene oxide cyclase 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017571 [exp] 286 / 1e-97 AT3G25780 266 / 6e-90 allene oxide cyclase 3 (.1) Lus10033535 [exp] 285 / 2e-97 AT3G25780 264 / 6e-89 allene oxide cyclase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0650 [poplar] [flax] AOC_barrel PF06351 [poplar] [flax] Allene_ox_cyc Allene oxide cyclase
Representative CDS sequence Show only first row Show all	>Potri.008G117300.2 pacid=42805813 polypeptide=Potri.008G117300.2.p locus=Potri.008G117300 ID=Potri.008G117300.2.v4.1 annot-version=v4.1 ATGGCCTCTACCAGCTCTCTCAAGCCAGTCTCTTCTCTCAAACTCTCTAACCCAAGATCCCAATCTCTCTTCCAATCCCAACAACAATTGGGTTTCACTC ACTCACAAGGCTTTGCAATTCAACACCTCAAACTCTCCAAAGCAAATCGTGATCAAGATCATTTCTCAACAAAAAGAAGCTCCGGGGACTTCACCACCAG AGCTTTCTTCTTCAACAAGAAGCCTAGGTCCCCTCCAGTATCTCCAAAACCAACTAAAGTTCAAGAGCTGAATGTGTATGAAATCAACGAGCGAGACAGA GGCAGCCCAGCCTTTTTAAAACTGAGTCAAAAACCCCAAAACTCTCTCGGTGACCTTGTGCCTTTCTCCAACAAGCTTTACTCTGGAGACTTACAGAAAC GGCTAGGCATAACTTCTGGTCTCTGTGTACTAATCCAAAATGTGCCAGAAAAGAAAGGTGATAGATATGAGGCAACATACAGCTTCTACTTTGGTGATTA TGGTCACATATCAGTACAAGGAGCATACCTGACCTATGAGGATACCTACCTAGCTGTGACTGGTGGGTCTGGGATCTTTGAGGGTGTGTATGGACAGGTC AAATTGCAGCAACTTGTGTTTCCGTTCAAGTTGTTTTACACTTTCTATTTGAAGGGAATACCTGATTTGCCAGCTGAACTTCTGGGACAGCCAGTCACCC CATCGCCAAGTGTGGAACCGGCTCCTGCTGCTAAGGCCACGGAACCTCGTGGGATTATCCAAAACTTCACTAAATGA
AA sequence Show only first row Show all	>Potri.008G117300.2 pacid=42805813 polypeptide=Potri.008G117300.2.p locus=Potri.008G117300 ID=Potri.008G117300.2.v4.1 annot-version=v4.1 MASTSSLKPVSSLKLSNPRSQSLFQSQQQLGFTHSQGFAIQHLKLSKANRDQDHFSTKRSSGDFTTRAFFFNKKPRSPPVSPKPTKVQELNVYEINERDR GSPAFLKLSQKPQNSLGDLVPFSNKLYSGDLQKRLGITSGLCVLIQNVPEKKGDRYEATYSFYFGDYGHISVQGAYLTYEDTYLAVTGGSGIFEGVYGQV KLQQLVFPFKLFYTFYLKGIPDLPAELLGQPVTPSPSVEPAPAAKATEPRGIIQNFTK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G25780		AOC3, AOC2	allene oxide cyclase 3 (.1)		Potri.008G117300 [exp]	0	1
AT1G17420		ATLOX3, LOX3	Arabidopsis thaliana lipoxygen...		Potri.001G167700 [exp]	4.12	0.9349	LOX3.1
AT5G42440			Protein kinase superfamily pro...		Potri.002G065400 [exp]	4.89	0.9218
AT1G43910			P-loop containing nucleoside t...		Potri.005G119200 [exp]	4.89	0.9148
AT3G18670			Ankyrin repeat family protein ...		Potri.006G062900 [exp]	6.32	0.9159
AT4G21865			unknown protein		Potri.008G172000 [exp]	6.63	0.9337
AT4G33050		EDA39	embryo sac development arrest ...		Potri.006G226400 [exp]	7.14	0.9316
AT3G50950		ZAR1	HOPZ-ACTIVATED RESISTANCE 1 (....		Potri.005G119800 [exp]	7.48	0.9204	RPP13.1
AT5G66900			Disease resistance protein (CC...		Potri.007G039000 [exp]	8.48	0.9198
					Potri.003G101900 [exp]	10.39	0.8967
AT5G42650		CYP74A, AOS, DD...	DELAYED DEHISCENCE 2, CYTOCHRO...		Potri.002G130700 [exp]	11.13	0.9255	AOS.7

Compare expression of checked genes

Potri.008G117300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.