Plant FIBer expression Database

Potri.008G117600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G29700 431 / 5e-152 Metallo-hydrolase/oxidoreductase superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10021698
[exp]
459 / 4e-163 AT1G29700 436 / 5e-154 Metallo-hydrolase/oxidoreductase superfamily protein (.1)
Lus10035042
[exp]
458 / 1e-162 AT1G29700 437 / 2e-154 Metallo-hydrolase/oxidoreductase superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0381 Metallo-HOrase PF13483 Lactamase_B_3 Beta-lactamase superfamily domain
Representative CDS sequence
>Potri.008G117600.1 pacid=42806940 polypeptide=Potri.008G117600.1.p locus=Potri.008G117600 ID=Potri.008G117600.1.v4.1 annot-version=v4.1
ATGGCTGTTCTTGTTCAATACAGTTATTATTATTCTCTTCTCTATAATTCTTGTAGAAGAACAACCAGACCCTTTTCTCCTTTTAAGCTATCCTCACCCA
CCCGTCTTGATCTATCCTCTTCTTATAATACTCCAATCAGCCACAGTTCAAGATCATTCAAGTTACCTAGAAACAGGTGTCATAAGGTTGTTGTCTCTGA
AGAAGAGAGCACTGTTGGGTCCGCTTCTGCTGCCACCGACACTGATGTGTTTAGGCTCACTTACTTAGAGGGGAATAGCTGGTTGTGGGAGGTAGGTGGG
GCTAATATTTTGGTTGACCCAATCTTGGTGGGTAACTTAGATTTTGGAATTCCATGGCTTTATGATGCTGCCAAGAAGGTCCTTAAGAATTTCCAGCTTA
GTGATCTTCCTCAAGTGGATTGCCTGTTGATCACTCAAAGCCTCGATGACCATTGCCACTTAAAGACCCTAAAGCCACTTTCTGAATCATATCCAAATCT
CAGAGTCATTGCAACTCCAAATGCTAAGCCTTTGCTGGATCCCCTTTTTAGTAATGTCATTTATCTAGAACCTGGTGAGAGTTCTGAATTTGATGCCAGA
AATGGCTCTAAAGTTGGAGTTAAAGCAACAGCAGGGCCAGTTCTAGGTCCTCCTTGGCAGCGCCCTGAGAATGGATACCTCATCAATTCTTCACGAGGTC
AATTAACACTCTACTATGAGCCTCACTGTGTATATAACAAGGATTTTCTTGAGAAGGAGCATGCTGACATTGTTATCACACCAGTCATCAAACAGCTTCT
GCCTAAATTTACTTTGGTTTCAGGACAAGAAGATGCAGTTAAACTTGCGAAGTTGCTGCGTGCCAAGTTTATTGTACCAATGAAAAATGGAGACCTCGAT
GGCAAAGGGTTTCTTGCCAGTATCATTCAGGCAGAGGGAACAGTAGAATCATTCAAGGAGCTTTTAGCGAAGGAACTACCAGATACTCAGGCACTTGAGC
CTACCCCTGGTGTGCCGCTGGAAATTTCAGAACCTTGA
AA sequence
>Potri.008G117600.1 pacid=42806940 polypeptide=Potri.008G117600.1.p locus=Potri.008G117600 ID=Potri.008G117600.1.v4.1 annot-version=v4.1
MAVLVQYSYYYSLLYNSCRRTTRPFSPFKLSSPTRLDLSSSYNTPISHSSRSFKLPRNRCHKVVVSEEESTVGSASAATDTDVFRLTYLEGNSWLWEVGG
ANILVDPILVGNLDFGIPWLYDAAKKVLKNFQLSDLPQVDCLLITQSLDDHCHLKTLKPLSESYPNLRVIATPNAKPLLDPLFSNVIYLEPGESSEFDAR
NGSKVGVKATAGPVLGPPWQRPENGYLINSSRGQLTLYYEPHCVYNKDFLEKEHADIVITPVIKQLLPKFTLVSGQEDAVKLAKLLRAKFIVPMKNGDLD
GKGFLASIIQAEGTVESFKELLAKELPDTQALEPTPGVPLEISEP

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G29700 Metallo-hydrolase/oxidoreducta... Potri.008G117600
[exp]
0 1
AT3G54360 zinc ion binding (.1) Potri.003G189400
[exp]
2.23 0.9709
AT5G45170 Haloacid dehalogenase-like hyd... Potri.015G112500
[exp]
3.46 0.9733
AT1G32990 PRPL11 plastid ribosomal protein l11 ... Potri.001G450800
[exp]
6.32 0.9737
AT4G09650 PDE332, ATPD PIGMENT DEFECTIVE 332, ATP syn... Potri.014G102100
[exp]
7.21 0.9717
AT3G23400 FIB4 fibrillin 4, Plastid-lipid ass... Potri.008G169100
[exp]
8.12 0.9730
AT3G17170 RFC3 REGULATOR OF FATTY-ACID COMPOS... Potri.008G101900
[exp]
8.48 0.9707 Pt-RFC3.1
AT4G11175 Nucleic acid-binding, OB-fold-... Potri.006G241100
[exp]
12.32 0.9694
AT3G10670 ABCI6, ATNAP7 ATP-binding cassette I6, non-i... Potri.008G012500
[exp]
12.84 0.9653 NAP7.2
AT1G79870 D-isomer specific 2-hydroxyaci... Potri.003G052700
[exp]
12.96 0.9581
AT5G61820 unknown protein Potri.015G108600
[exp]
13.19 0.9412

Potri.008G117600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.