Plant FIBer expression Database

Potri.008G117700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G25540 778 / 0 MED25, PFT1 PHYTOCHROME AND FLOWERING TIME 1, mediator 25, phytochrome and flowering time regulatory protein (PFT1) (.1), phytochrome and flowering time regulatory protein (PFT1) (.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G128600
[exp]
1138 / 0 AT1G25540 793 / 0.0 PHYTOCHROME AND FLOWERING TIME 1, mediator 25, phytochrome and flowering time regulatory protein (PFT1) (.1), phytochrome and flowering time regulatory protein (PFT1) (.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10041483
[exp]
895 / 0 AT1G25540 787 / 0.0 PHYTOCHROME AND FLOWERING TIME 1, mediator 25, phytochrome and flowering time regulatory protein (PFT1) (.1), phytochrome and flowering time regulatory protein (PFT1) (.2)
Lus10034282
[exp]
821 / 0 AT1G25540 169 / 2e-43 PHYTOCHROME AND FLOWERING TIME 1, mediator 25, phytochrome and flowering time regulatory protein (PFT1) (.1), phytochrome and flowering time regulatory protein (PFT1) (.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0128 vWA-like PF11265 Med25_VWA Mediator complex subunit 25 von Willebrand factor type A
Representative CDS sequence
>Potri.008G117700.6 pacid=42808537 polypeptide=Potri.008G117700.6.p locus=Potri.008G117700 ID=Potri.008G117700.6.v4.1 annot-version=v4.1
ATGGCGGACAAACAGCTGATCGTGGCCGTTGAAGGCACGGCCGCCATGGGCCCTTTCTGGTTGATCATCGTTTCTGATTATCTTGAAAAGATTATCAGGT
GTTATTGTGGTAATGAAACGTCAGGGCAGAAGCCCCCTACTTCTAGTGCTGAGCTCTCTCTTGTCACGTTTAATTCTCATGGATCATATTCTGCTTGCCT
GGTACAACGTAGTGGCTGGACAAGAGATGTTGACATCTTCTTACACTGGCTATCAGCCATTCCTTTTGCTGGTGGCGGTTTCAATGATGCTGCAATTGCA
GAAGGGCTTTCTGAAGCTCTAATGATGTTCCCTATTACTCCAAATGGAAACCAAACTCAACCAAATACAGATGGGCAAAGAAATTGTATTCTTATTGCTG
CAAGTAACCCTCACCCATTGCCCACTCCAGTCTATCGTCCACAAATACAAAATTTGGAGCAGACTGAAAACATCGATGCACAGAATGAAAGTCGTCTATC
TGATGCAGAGACAGTTGCTAAATCATTTCCTCAGTGCTCGGTTTCTCTTTCAGTCATCTGTCCAAAACAGCTTCCAAAACTTAGATTAATCTACAATGCA
GGGAAGCGCAACAGCCGAGCAGCAGATCCACCTGTCGACAACATAAAAAATCCTCATTTTCTTGTGCTGATCTCAGAGAACTTTATGGAGGCTCGTGCTG
CATTAAGTCGTCCTGGAGCTACAAGTTTGCCTTCTAATCAAACACCTGTTAAAGTGGATATTGCTTCAGTTACTTCAGTAACTGGGCCACTTCCAGCTTC
AATTCCTTCAGTGAATGGATCTATCACAAATCGGCCGCCAATTTCAGTTGGAAATCTTCCAACTGCAACTGTGAAAGTCGAACCAAGTACTATAACTTCT
ATGGCAAATGGATCTGCTTTTCCCCATATTACTTCTGTTCCACGCCCTTCATCTCAAGGAGTTCCAAGCATGCAGACTTCATCACCATCCACGACTACTC
AAGATATGGCAACAAACGGTGAAAATGCGCAGGACTTGAAACCTAATGTCAGTGTGACGACACAGTCTGCACGTTCTGCGCCTCCTGCTGCAGCTAACGT
GAACATTCTGAACAATCTTTCTCAAGCAAGGCAAGTGATGAACTCTGCAGCCCTAAGTGGAGGAACTTCTATTGGTCTCCCATCAATAAATCAAACTTCT
GTGGCTATGCATATGTCAAGTATGATTTCAAGTGGAATGACGTCTTCCGTGCCTGCTGCTCAAACTGTATTTTCATCTGGGCAACCAGGTGTTTCTTCAA
TAACAGGGTCAGGGAATCTTACTGGGACAACACAAATCACACCAAACTCTGGTCTGGGCTCATTCACTTCCGCAACTTCTAACATGCCTGGAAACTCAAA
CCTTGGGGGGATTTCACAACCAATGGGTAATCTTCACGCAGGTGTTAGCATCAGCCAATCAGCAATGAGTGGTCTGGGTACAAACCCAAACACAATGAGC
GGTTCAGGAGCACAAATGGTACAAAGTGGAATGGGTGCAAACCCCAACACAATGAGTGGTCTGGGTGCTTCAGGTGTCTCTTCTGGTTCGAACACAATGA
TTCCTACTCCAGGAATGTCTCAACAAGTACAATCTGGGATGCAGCCTCTTGGTGCAAACAATAACTCAGCAGCTAATTTGCCATTGTCACAACAGACAGC
AGGGGGCTTGCAACCAGCTCAATCGAAATATGTCAAAGTTTGGGAGGGAAACTTGTCTGGGCAACGGCAAGGGCAGCCTGTCTTTATCACTAGACTAGAA
GGTTATAGGAGTGCTTCGGCCTCTGAGACGCTTGCAGCAAACTGGCCGCCAACAATGCAAATAGTTCGGCTTATATCTCAGGATCACATGAATAACAAGC
AATATGTTGGAAAGGCTGATTTTCTAGTATTTCGGGCTATGAATCAGCATGGATTTCTTGGACAACTCCAAGAGAAGAAGCTTTGTGCAGTAATCCAGTT
ACCATCTCAGACATTGCTACTCTCTGTTTCTGACAAAGCCTGCCGCTTGATAGGGATGCTTTTTCCTGGGGATATGGTTGTGTTTAAGCCACAAATATCC
AGTCAGCAGCAACAAATGCAACAGCAGCATCACCAACAGATGCAACAACAACAACATCCACAACTACAGCAGCTTCAACATCAGCAGCAGCTCCCACAAC
TACAGCAGCAGCAACAGCTCTCACAGCTACAGCAGCAGCAGCAGCAGCTCTCACAGCTTCAACAGCAGCAGCCACAGCAGCTCTCACAGCTTCAACAGCA
GCAGCCACAGCAGCTACCTCAATTGCAGCAGCAGCAGCAGCTCTCACAGCTTCAACAGCAGCAGCTTCCACAAATGCAGCAGCAGCTTCCACAAATGCAG
CAGCAGCAGCAATTGCAGCAGCAGCAGCAAATGCAGCAGCAGCAGCAAATGCAGCAGCAGCAGCAATTGCAGCAGCAGCAGCAGCAGCAATTGCAGCAGC
AGCAGCAGCAGCAAATGCAGCAGCAGCAGCAGCAGCAGCTTCAGCAAATGCAGCAGCAGCAGCAAATGGTTGGAACAGGAATGGGTCAAACTTATGTTCA
AGGTCCAGGTCGTTCACAATTAGTTTCTCAAGGACAAGTTTCTTCACAAGGGCCAGCAAACATGTCTGGAGGAGGCTTTATGAGTCAATAA
AA sequence
>Potri.008G117700.6 pacid=42808537 polypeptide=Potri.008G117700.6.p locus=Potri.008G117700 ID=Potri.008G117700.6.v4.1 annot-version=v4.1
MADKQLIVAVEGTAAMGPFWLIIVSDYLEKIIRCYCGNETSGQKPPTSSAELSLVTFNSHGSYSACLVQRSGWTRDVDIFLHWLSAIPFAGGGFNDAAIA
EGLSEALMMFPITPNGNQTQPNTDGQRNCILIAASNPHPLPTPVYRPQIQNLEQTENIDAQNESRLSDAETVAKSFPQCSVSLSVICPKQLPKLRLIYNA
GKRNSRAADPPVDNIKNPHFLVLISENFMEARAALSRPGATSLPSNQTPVKVDIASVTSVTGPLPASIPSVNGSITNRPPISVGNLPTATVKVEPSTITS
MANGSAFPHITSVPRPSSQGVPSMQTSSPSTTTQDMATNGENAQDLKPNVSVTTQSARSAPPAAANVNILNNLSQARQVMNSAALSGGTSIGLPSINQTS
VAMHMSSMISSGMTSSVPAAQTVFSSGQPGVSSITGSGNLTGTTQITPNSGLGSFTSATSNMPGNSNLGGISQPMGNLHAGVSISQSAMSGLGTNPNTMS
GSGAQMVQSGMGANPNTMSGLGASGVSSGSNTMIPTPGMSQQVQSGMQPLGANNNSAANLPLSQQTAGGLQPAQSKYVKVWEGNLSGQRQGQPVFITRLE
GYRSASASETLAANWPPTMQIVRLISQDHMNNKQYVGKADFLVFRAMNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKACRLIGMLFPGDMVVFKPQIS
SQQQQMQQQHHQQMQQQQHPQLQQLQHQQQLPQLQQQQQLSQLQQQQQQLSQLQQQQPQQLSQLQQQQPQQLPQLQQQQQLSQLQQQQLPQMQQQLPQMQ
QQQQLQQQQQMQQQQQMQQQQQLQQQQQQQLQQQQQQQMQQQQQQQLQQMQQQQQMVGTGMGQTYVQGPGRSQLVSQGQVSSQGPANMSGGGFMSQ

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G25540 MED25, PFT1 PHYTOCHROME AND FLOWERING TIME... Potri.008G117700
[exp]
0 1
AT2G12550 NUB1 homolog of human NUB1, ubiquit... Potri.006G061500
[exp]
3.16 0.8552
AT1G78080 AP2_ERF CAF1, RAP2.4, W... wound induced dedifferentiatio... Potri.002G094200
[exp]
7.21 0.8288 DREB19
AT4G28070 AFG1-like ATPase family protei... Potri.018G100900
[exp]
12.24 0.7917
AT1G64385 unknown protein Potri.001G092300
[exp]
12.36 0.8315
AT4G29790 unknown protein Potri.006G146700
[exp]
16.06 0.8233
AT3G28730 NFD, SSRP1, ATH... NUCLEOSOME/CHROMATIN ASSEMBLY ... Potri.017G078500
[exp]
16.79 0.8317 HMGB906,ATHMG.1
AT5G56900 C3HZnF CwfJ-like family protein / zin... Potri.006G152100
[exp]
17.94 0.7796
AT3G27010 TCP ATTCP20, PCF1, ... ARABIDOPSIS THALIANA TEOSINTE ... Potri.001G060000
[exp]
21.16 0.7998
AT3G14840 Leucine-rich repeat transmembr... Potri.019G009800
[exp]
23.49 0.8100
AT5G58620 C3HZnF zinc finger (CCCH-type) family... Potri.009G046800
[exp]
23.66 0.8235

Potri.008G117700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.