Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68660 271 / 9e-95 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G128500 [exp] 300 / 4e-106 AT1G68660 256 / 1e-88 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein (.1.2) Potri.010G096600 [exp] 60 / 9e-12 AT1G68660 60 / 1e-11 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein (.1.2) Potri.008G145500 [exp] 57 / 7e-11 AT1G68660 62 / 8e-13 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035041 [exp] 270 / 4e-94 AT1G68660 247 / 2e-85 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein (.1.2) Lus10041479 [exp] 244 / 5e-84 AT1G68660 235 / 1e-80 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein (.1.2) Lus10034292 [exp] 243 / 1e-83 AT1G68660 234 / 3e-80 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02617 [poplar] [flax] ClpS ATP-dependent Clp protease adaptor protein ClpS
Representative CDS sequence Show only first row Show all	>Potri.008G117800.2 pacid=42808084 polypeptide=Potri.008G117800.2.p locus=Potri.008G117800 ID=Potri.008G117800.2.v4.1 annot-version=v4.1 ATGGAGACTGCAATTTGTGGGAGAATAGCTCTCTCACCTAATCACGTCTTTAACCCTAAACCCGGAGACAAGAACTCTGTTTGTAGAGGACCATGTGCCA ACCGTGGGATTCTCATGGCTATATCAACAACATGCTCAGGCAAAGGAGGAGGGTTATTGGAGAAGCCGGTTATCGAGAGAACCACCCCCGGTCGCGAATC TGAGTTTGATTTAAGGAAATCAAAGAAAATGGCACCACCTTATCGAGTGATGTTGCACAATGACAACTACAATAAACGTGAATATGTTGTACAAGTTCTG ATGAAAGTTATCCCCGGGATGACCCTTGACAATGCTGTTAATATAATGCAAGAAGCACACTACAATGGCCTGTCGGTGGTGATTATTTGCGCTCAGGCTG ATGCTGAAGAGCACTGCATGCAGCTGAGAGGTAATGGACTTCTGAGTTCAATTGAACCTGCAAGTGGTGGTTGCTGA
AA sequence Show only first row Show all	>Potri.008G117800.2 pacid=42808084 polypeptide=Potri.008G117800.2.p locus=Potri.008G117800 ID=Potri.008G117800.2.v4.1 annot-version=v4.1 METAICGRIALSPNHVFNPKPGDKNSVCRGPCANRGILMAISTTCSGKGGGLLEKPVIERTTPGRESEFDLRKSKKMAPPYRVMLHNDNYNKREYVVQVL MKVIPGMTLDNAVNIMQEAHYNGLSVVIICAQADAEEHCMQLRGNGLLSSIEPASGGC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G68660			Ribosomal protein L12/ ATP-dep...		Potri.008G117800 [exp]	0	1
AT2G39000			Acyl-CoA N-acyltransferases (N...		Potri.008G039300 [exp]	1.73	0.9544
AT5G27280			Zim17-type zinc finger protein...		Potri.002G015900 [exp]	4.58	0.9094
AT4G35770		ATSEN1, DIN1, S...	SENESCENCE ASSOCIATED GENE 1, ...		Potri.005G106400 [exp]	5.29	0.9244
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Potri.003G219000 [exp]	6.16	0.9332
AT3G55250		PDE329	PIGMENT DEFECTIVE 329, unknown...		Potri.017G073000 [exp]	17.88	0.9240
AT5G67290			FAD-dependent oxidoreductase f...		Potri.005G060500 [exp]	19.13	0.8980
AT4G01940		ATCNFU1, NFU1	NFU domain protein 1 (.1)		Potri.002G192200 [exp]	20.44	0.9170	Pt-NFU1.2
AT4G35090		CAT2	catalase 2 (.1.2)		Potri.002G009800 [exp]	21.00	0.9258	CAT1,Pt-CAT1.4
AT3G20270			lipid-binding serum glycoprote...		Potri.008G004500 [exp]	25.76	0.8815
AT1G31170		ATSRX	sulfiredoxin (.1.2.3.4)		Potri.012G124500 [exp]	26.00	0.9002

Compare expression of checked genes

Potri.008G117800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.