Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G25510 373 / 7e-126 Eukaryotic aspartyl protease family protein (.1) AT3G18490 317 / 6e-104 Eukaryotic aspartyl protease family protein (.1) AT3G61820 185 / 3e-53 Eukaryotic aspartyl protease family protein (.1) AT1G01300 184 / 7e-53 Eukaryotic aspartyl protease family protein (.1) AT3G20015 171 / 2e-48 Eukaryotic aspartyl protease family protein (.1) AT5G10770 97 / 2e-21 Eukaryotic aspartyl protease family protein (.1) AT3G59080 96 / 3e-21 Eukaryotic aspartyl protease family protein (.1.2) AT1G64830 92 / 6e-20 Eukaryotic aspartyl protease family protein (.1) AT5G10760 91 / 2e-19 Eukaryotic aspartyl protease family protein (.1) AT2G42980 90 / 4e-19 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G128200 [exp] 555 / 0 AT1G25510 622 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.015G051800 [exp] 323 / 3e-106 AT3G18490 585 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.014G099400 [exp] 193 / 2e-56 AT1G01300 633 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.007G106300 [exp] 183 / 3e-52 AT3G20015 575 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.002G171700 [exp] 181 / 1e-51 AT1G01300 642 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.005G063000 [exp] 178 / 2e-50 AT3G20015 560 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.005G204600 [exp] 110 / 9e-26 AT3G59080 686 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.006G232600 [exp] 99 / 3e-22 AT5G10770 438 / 1e-150 Eukaryotic aspartyl protease family protein (.1) Potri.018G014700 [exp] 97 / 8e-22 AT5G10770 407 / 1e-138 Eukaryotic aspartyl protease family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042978 [exp] 232 / 7e-71 AT3G18490 504 / 3e-176 Eukaryotic aspartyl protease family protein (.1) Lus10032482 [exp] 186 / 1e-54 AT3G18490 339 / 2e-113 Eukaryotic aspartyl protease family protein (.1) Lus10003999 [exp] 177 / 3e-50 AT1G01300 636 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10010157 [exp] 147 / 5e-39 AT3G20015 545 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10017362 [exp] 147 / 6e-39 AT3G20015 549 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10030246 [exp] 141 / 1e-37 AT1G01300 472 / 3e-165 Eukaryotic aspartyl protease family protein (.1) Lus10007335 [exp] 114 / 2e-27 AT3G59080 698 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10025702 [exp] 103 / 1e-23 AT2G03200 529 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10035961 [exp] 101 / 4e-23 AT2G03200 525 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10002613 [exp] 84 / 2e-17 AT5G33340 406 / 4e-139 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [poplar] [flax] Peptidase_AA PF14541 [poplar] [flax] TAXi_C Xylanase inhibitor C-terminal CL0129 [poplar] [flax] Peptidase_AA PF14543 [poplar] [flax] TAXi_N Xylanase inhibitor N-terminal
Representative CDS sequence Show only first row Show all	>Potri.008G118100.2 pacid=42806855 polypeptide=Potri.008G118102.1.p locus=Potri.008G118100 ID=Potri.008G118100.2.v4.1 annot-version=v4.1 ATGGGGCTTCTCCTTTACGCTCTCTTCTCCCTGTTTTTCATTTCTCCATTTGTTTCCTCCTCTCGAACGCTAACACCACAGCCCTCCAAAACGACATTCC TTGACGTCGCTTCTTCCATCCAAAAAACCAAAAACATTTTCTCTTCTAACACTAAAACGTCAATGTTTAACCAACAAGAGAAAGAAACCACCTCGTCAGA ACTAACGGTAGAGCTGCATTCTAGAACTTCCCTTCAAAAAACCACGCACACTGACTACAAATCACTAACCTTATCTCGGCTCCAGCGTGACTCAGCCCGA GTCAAGTCTCTCTTAACTCGTTTAGATCTAGCCATCAATTCCTTTTCCACTTCAAATCTTAAACCACTTGAGACTGATTCGGAATTCAAATCTGAGGCTC TACAAAGCCCGGTTATATCTGGTACGAGTCAAGGCTCTACAAGTGGTGAGTACTTCTCCCGAGTTGGAATCGGAAAACCAGTTAGTCAAGCCTATCTTAT ACTCGACACTGGCAGTGACCAAGCCGACCCCATCTTCGAGCCGGCTACCTCGGCTTCCTTCTCTCCTTTAACCTGCAACACCAAGCAATGCAGGTCCCTC GACGTGTCAGAATGCCGGAACGACACGTGTCTCTACGAGGTTTCGTACGGGGATGGGTCTTATACCGTTAGTGATTTTGTTACTGGGACTATCACTCTCG GCTCGGCTTCAGTTGATAATGTGGGTATCGGCTGTGGACATAATAATGAAGGTTTGTTTATTGGAGCTGCTGGCTTGCTTGGACTCGGAGGAGGCTCGTT GTCTTTCCCTTCTCAGATCATTACGACGTCATTTTCTTATTGCCTCGTGGATCGTGATTCCGAGTCGGCTTCAACTCTCGAGTTTAACTCACCTGTAGGT GGTGAGCTGGTATCGATTCCCGTGTCGGCGTTTCAAATCGATGAATCAGGAAATGGAGGGCTGCAAACGGACGTTTATAACTCCCTGAGTGGTGCGTTGT TAGGGGAACGAAGGACTTGCCGTCAACTAACGGGATATCGTTGTTTGACGCGTGTTATAATTTGTCTTCTAGAGGGAACGTGGAGGTGCCAACGGTATCG TTTCACTTTCCTGATGGGAAGTTGTTACCGTTACATGGTTCCGCTTGACTCGGAAGGAACGTTTTGTTTTGCTTTTGCACCAACGGCTTCATCTTTGTCC ATTATTGGGAACGTCCAGCAGCGGGGAACACGTGTCGGTTATGATCTCGTGGACCCTTTTGTTCGGTTCCGAGTCAAGTGGAACCATGTAATTAACCGCT AG
AA sequence Show only first row Show all	>Potri.008G118100.2 pacid=42806855 polypeptide=Potri.008G118102.1.p locus=Potri.008G118100 ID=Potri.008G118100.2.v4.1 annot-version=v4.1 MGLLLYALFSLFFISPFVSSSRTLTPQPSKTTFLDVASSIQKTKNIFSSNTKTSMFNQQEKETTSSELTVELHSRTSLQKTTHTDYKSLTLSRLQRDSAR VKSLLTRLDLAINSFSTSNLKPLETDSEFKSEALQSPVISGTSQGSTSGEYFSRVGIGKPVSQAYLILDTGSDQADPIFEPATSASFSPLTCNTKQCRSL DVSECRNDTCLYEVSYGDGSYTVSDFVTGTITLGSASVDNVGIGCGHNNEGLFIGAAGLLGLGGGSLSFPSQIITTSFSYCLVDRDSESASTLEFNSPVG GELVSIPVSAFQIDESGNGGLQTDVYNSLSGALLGERRTCRQLTGYRCLTRVIICLLEGTWRCQRYRFTFLMGSCYRYMVPLDSEGTFCFAFAPTASSLS IIGNVQQRGTRVGYDLVDPFVRFRVKWNHVINR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G25510			Eukaryotic aspartyl protease f...		Potri.008G118100 [exp]	0	1
AT3G51930			Transducin/WD40 repeat-like su...		Potri.001G022900 [exp]	1.41	0.8540
AT4G01140			Protein of unknown function (D...		Potri.002G166900 [exp]	9.64	0.7811
AT4G25240		SKS1	SKU5 similar 1 (.1)		Potri.015G127200 [exp]	12.96	0.7890	SKS1.3
AT1G45688			unknown protein		Potri.014G026800 [exp]	13.03	0.8059
AT5G54400			S-adenosyl-L-methionine-depend...		Potri.011G128300 [exp]	13.07	0.7658
AT4G36930	bHLH	SPT, bHLH024	SPATULA, basic helix-loop-heli...		Potri.002G124400 [exp]	14.28	0.7620	Pt-ALC.1
AT1G28390			Protein kinase superfamily pro...		Potri.005G158600 [exp]	29.74	0.8197
AT5G07010		ATST2A	ARABIDOPSIS THALIANA SULFOTRAN...		Potri.001G036600 [exp]	30.00	0.8256
AT4G36950		MAPKKK21	mitogen-activated protein kina...		Potri.003G184200 [exp]	38.66	0.8022
AT3G18670			Ankyrin repeat family protein ...		Potri.014G057950 [exp]	38.88	0.8024

Compare expression of checked genes

Potri.008G118100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.