Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	PAN.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68640 457 / 5e-159 bZIP PAN PERIANTHIA, bZIP transcription factor family protein (.1) AT3G12250 385 / 2e-132 bZIP BZIP45, TGA6 TGACG motif-binding factor 6 (.1.2.3.4.5) AT5G06950 374 / 4e-128 bZIP TGA2, AHBP-1B bZIP transcription factor family protein (.1.2.3.4) AT5G06960 353 / 7e-120 bZIP TGA5, OBF5 TGACG MOTIF-BINDING FACTOR 5, OCS-element binding factor 5 (.1.2) AT1G08320 306 / 3e-101 bZIP TGA9, bZIP21 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) AT5G06839 298 / 2e-97 bZIP TGA10, bZIP65 TGACG \(TGA\) motif-binding protein 10, bZIP transcription factor family protein (.1.2.3) AT5G10030 281 / 2e-91 bZIP OBF4, TGA4 OCS ELEMENT BINDING FACTOR 4, TGACG motif-binding factor 4 (.1.2) AT5G65210 275 / 1e-88 bZIP TGA1 bZIP transcription factor family protein (.1.2.3.4.5.6) AT1G77920 262 / 6e-84 bZIP bZIP transcription factor family protein (.1) AT1G22070 261 / 3e-83 bZIP TGA3 TGA1A-related gene 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G194600 [exp] 426 / 4e-146 AT3G12250 462 / 3e-162 TGACG motif-binding factor 6 (.1.2.3.4.5) Potri.001G029800 [exp] 425 / 4e-146 AT3G12250 423 / 4e-147 TGACG motif-binding factor 6 (.1.2.3.4.5) Potri.006G039000 [exp] 408 / 1e-139 AT5G06950 413 / 3e-143 bZIP transcription factor family protein (.1.2.3.4) Potri.016G036500 [exp] 404 / 7e-138 AT5G06950 410 / 2e-142 bZIP transcription factor family protein (.1.2.3.4) Potri.006G058800 [exp] 340 / 2e-112 AT5G06839 540 / 0.0 TGACG \(TGA\) motif-binding protein 10, bZIP transcription factor family protein (.1.2.3) Potri.016G049200 [exp] 318 / 3e-104 AT5G06839 551 / 0.0 TGACG \(TGA\) motif-binding protein 10, bZIP transcription factor family protein (.1.2.3) Potri.004G203400 [exp] 307 / 1e-99 AT1G08320 571 / 0.0 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) Potri.009G164300 [exp] 305 / 1e-98 AT1G08320 574 / 0.0 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) Potri.007G085700 [exp] 287 / 1e-93 AT5G65210 523 / 0.0 bZIP transcription factor family protein (.1.2.3.4.5.6)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041475 [exp] 456 / 1e-157 AT1G68640 444 / 4e-153 PERIANTHIA, bZIP transcription factor family protein (.1) Lus10034296 [exp] 436 / 3e-150 AT1G68640 427 / 1e-146 PERIANTHIA, bZIP transcription factor family protein (.1) Lus10024140 [exp] 417 / 8e-145 AT3G12250 532 / 0.0 TGACG motif-binding factor 6 (.1.2.3.4.5) Lus10026166 [exp] 413 / 2e-143 AT3G12250 514 / 0.0 TGACG motif-binding factor 6 (.1.2.3.4.5) Lus10008658 [exp] 397 / 6e-137 AT3G12250 521 / 0.0 TGACG motif-binding factor 6 (.1.2.3.4.5) Lus10004876 [exp] 315 / 5e-102 AT1G08320 635 / 0.0 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) Lus10023822 [exp] 311 / 2e-101 AT5G06839 491 / 2e-171 TGACG \(TGA\) motif-binding protein 10, bZIP transcription factor family protein (.1.2.3) Lus10020610 [exp] 310 / 4e-100 AT1G08320 633 / 0.0 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) Lus10043387 [exp] 285 / 1e-91 AT1G08320 481 / 7e-168 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) Lus10019543 [exp] 282 / 4e-90 AT1G08320 508 / 5e-178 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0018 [poplar] [flax] bZIP PF00170 [poplar] [flax] bZIP_1 bZIP transcription factor CL0018 [poplar] [flax] PF14144 [poplar] [flax] DOG1 Seed dormancy control
Representative CDS sequence Show only first row Show all	>Potri.008G118300.1 pacid=42807836 polypeptide=Potri.008G118300.1.p locus=Potri.008G118300 ID=Potri.008G118300.1.v4.1 annot-version=v4.1 ATGTACTGCCACTCTTCCTTCCTTCCCCGAGGAGAAGATATTAATAGCAGAAACCAGACGCGTTTTGCGGATCTTGGAGAGCTTCATCAACCAGCTCCTG TTTTTCCTCACGACGATGCTGTTGATTTAAGCTCAAGCTCCATGTTCAGTCTAAAATCAGGCAATGTCACTGTTGTGTCCCCTAACTTACCTTATGCTAC TGCCTTGAACACGAGTATTGGGCCGGTAGAGATAGCAACTACTGGAGCAGGGTGTTTGGACACAGGGCAATACATGTACCAGAAGGGAACAGGGTTTGGT TCCTCGTTGGGAAACTGGCAGAGTATTGAGACTTGGGGAGACTCAGGGATGGCAGATAATAGCCAACAGACTGACACTTCAACAGATGTAGATGCTGATG ACAAAAACCAGCTTTATGGAGTTCAGCATGGTACAGTTGTGGTTGTAGAATCTGTGGATCAATCAAAGGGAAAAACTGGTGACCAAAAGACTCTTCGAAG GCTGGCTCAGAACCGCGAGGCTGCAAGGAAAAGTCGGCTTAGGAAGAAAGCATATGTCCAGCAGCTCGAGAGTAGTCGACTCAGGCTTACACAACTAGAG CAAGAGCTTCAACGAGCACGCCAGCAGGGATTTTTTATTGCATCTGGATTTTCTGGGGATCATGGCCATTCAATAGCTGGAAATGAGGCCTTTGCGTTTG ACTTGGACTATTCACGCTGGCTGGATGAACATCATCGACTGATCAACGACCTAAGATCAGCCATGAATTCTCATATGAGTGATGACGAGTTACGGCTTCT TGTTGATGGTGTAATGGCACACTATGATGAAATATTCCGACTGAAGAGCATTGGTGCAAAAGCGGATGTATTTCATATGCTTTCAGGCATGTGGAAGACA CCTGCAGAAAGATGCTTCATGTGGTTGGGTGGATTTAAATCTTCTGAACTTCTCAAGATTCTCGGGAACCACCTTGAACCCTTGACAGATCAACAGTTGA TGGGCATATGCAATCTGCAGCAATCATCCCAACAAGCTGAAGATGCCTTGTCTCAAGGAATGGAAGCTTTGCAACAATCACTTGTAGACACACTATCATC CACCTCTCTGGGCCCTGCTGGTTCTGGAAATGTTGCTGATTACATGGGCCAAATGGCAATTGCCATGGGGAAGCTCGCAACACTAGAGAACTTCCTTCAC CAAGCAGACCTATTAAGACAACAAACTTTGCAACAAATGCATCGAATTTTGACGACTCGTCAGGCTGCCCGTGCCCTTCTTGTTATCAGTGACTACACTT CACGTCTCCGGGCACTCAGCTCTTTATGGTTAGCACGGCCCAGAGATTGA
AA sequence Show only first row Show all	>Potri.008G118300.1 pacid=42807836 polypeptide=Potri.008G118300.1.p locus=Potri.008G118300 ID=Potri.008G118300.1.v4.1 annot-version=v4.1 MYCHSSFLPRGEDINSRNQTRFADLGELHQPAPVFPHDDAVDLSSSSMFSLKSGNVTVVSPNLPYATALNTSIGPVEIATTGAGCLDTGQYMYQKGTGFG SSLGNWQSIETWGDSGMADNSQQTDTSTDVDADDKNQLYGVQHGTVVVVESVDQSKGKTGDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLRLTQLE QELQRARQQGFFIASGFSGDHGHSIAGNEAFAFDLDYSRWLDEHHRLINDLRSAMNSHMSDDELRLLVDGVMAHYDEIFRLKSIGAKADVFHMLSGMWKT PAERCFMWLGGFKSSELLKILGNHLEPLTDQQLMGICNLQQSSQQAEDALSQGMEALQQSLVDTLSSTSLGPAGSGNVADYMGQMAIAMGKLATLENFLH QADLLRQQTLQQMHRILTTRQAARALLVISDYTSRLRALSSLWLARPRD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G68640	bZIP	PAN	PERIANTHIA, bZIP transcription...		Potri.008G118300 [exp]	0	1	PAN.2
AT5G66560			Phototropic-responsive NPH3 fa...		Potri.007G033900 [exp]	1.73	0.8252
AT1G16220			Protein phosphatase 2C family ...		Potri.004G066200 [exp]	3.16	0.7893
AT2G39490			F-box family protein (.1)		Potri.008G050800 [exp]	15.62	0.7706
AT1G67730		ATKCR1, YBR159,...	beta-ketoacyl reductase 1 (.1)		Potri.010G052400 [exp]	17.17	0.7507
AT3G63300		FKD1	FORKED 1 (.1.2)		Potri.005G213800 [exp]	17.66	0.7745
AT5G64530	NAC	ANAC104, XND1	Arabidopsis NAC domain contain...		Potri.003G022800 [exp]	20.83	0.7058	NAC118
AT4G35240			Protein of unknown function (D...		Potri.004G182900 [exp]	21.21	0.6960
AT5G53020			Ribonuclease P protein subunit...		Potri.015G012000 [exp]	26.58	0.7390
AT5G14210			Leucine-rich repeat protein ki...		Potri.012G095600 [exp]	34.14	0.7159
AT1G15030			Protein of unknown function (D...		Potri.013G149400 [exp]	36.60	0.7353

Compare expression of checked genes

Potri.008G118300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.