Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68620 345 / 3e-118 alpha/beta-Hydrolases superfamily protein (.1) AT5G16080 332 / 9e-113 ATCXE17 carboxyesterase 17 (.1) AT5G62180 176 / 2e-52 ATCXE20 carboxyesterase 20 (.1) AT5G06570 171 / 2e-50 alpha/beta-Hydrolases superfamily protein (.1.2) AT2G45600 155 / 2e-44 alpha/beta-Hydrolases superfamily protein (.1) AT5G23530 150 / 2e-42 ATCXE18 carboxyesterase 18 (.1) AT2G45610 147 / 1e-41 alpha/beta-Hydrolases superfamily protein (.1) AT1G47480 145 / 8e-41 alpha/beta-Hydrolases superfamily protein (.1) AT3G48700 144 / 5e-40 ATCXE13 carboxyesterase 13 (.1) AT3G05120 144 / 8e-40 ATGID1A, GID1A GA INSENSITIVE DWARF1A, alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G127600 [exp] 585 / 0 AT5G16080 346 / 2e-118 carboxyesterase 17 (.1) Potri.017G113700 [exp] 418 / 6e-147 AT5G16080 358 / 3e-123 carboxyesterase 17 (.1) Potri.004G101400 [exp] 412 / 1e-144 AT5G16080 357 / 6e-123 carboxyesterase 17 (.1) Potri.009G155800 [exp] 200 / 9e-62 AT5G06570 310 / 4e-105 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.003G192650 [exp] 195 / 1e-59 AT5G16080 182 / 1e-54 carboxyesterase 17 (.1) Potri.016G031500 [exp] 193 / 7e-59 AT1G68620 159 / 5e-46 alpha/beta-Hydrolases superfamily protein (.1) Potri.006G198800 [exp] 191 / 2e-58 AT5G06570 373 / 1e-129 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.016G065000 [exp] 191 / 3e-58 AT5G06570 376 / 7e-131 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.003G192600 [exp] 191 / 4e-58 AT1G68620 173 / 2e-51 alpha/beta-Hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017587 [exp] 330 / 5e-112 AT5G16080 329 / 5e-112 carboxyesterase 17 (.1) Lus10033548 [exp] 323 / 2e-109 AT5G16080 330 / 3e-112 carboxyesterase 17 (.1) Lus10041473 [exp] 290 / 4e-96 AT1G68620 248 / 5e-80 alpha/beta-Hydrolases superfamily protein (.1) Lus10036168 [exp] 203 / 6e-63 AT5G06570 321 / 2e-109 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10024087 [exp] 193 / 1e-58 AT5G16080 187 / 1e-56 carboxyesterase 17 (.1) Lus10002019 [exp] 192 / 1e-58 AT5G16080 218 / 1e-68 carboxyesterase 17 (.1) Lus10015989 [exp] 190 / 7e-58 AT5G06570 337 / 1e-115 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10002907 [exp] 189 / 2e-57 AT5G16080 204 / 3e-63 carboxyesterase 17 (.1) Lus10015988 [exp] 183 / 4e-55 AT5G06570 346 / 5e-119 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10008439 [exp] 183 / 5e-55 AT5G06570 281 / 8e-94 alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF00135 [poplar] [flax] COesterase Carboxylesterase family
Representative CDS sequence Show only first row Show all	>Potri.008G118400.1 pacid=42807084 polypeptide=Potri.008G118400.1.p locus=Potri.008G118400 ID=Potri.008G118400.1.v4.1 annot-version=v4.1 ATGGGAACCAGAAATGTTAAAGATGGTTTAAATTTAAGCCTGCAAATCGATAAAGATTGTCACCAACATGGAGCAGTGACCGAGGAAATTGATGGGCTAA TCAAAGTGTACGAAGATGAGCATGTGGAGAGACCAAAGATTGTTCCGTGTGTCACAAGTGATTTACCTCACGAGCTCGGTGTGACCTCACGGGACGTAGT CATTGACAAGTTCACAAACATTTGGGCACGTTTTTATGTCTCAATAAAGTGCCATGGTAAGCTGCCTTTACTTGTATATTTCCATGGAGGTGGGTTCTGT GTAGGCTCAGCTGCTTGGAGTTGCTACCATGACTTCCTAGCAAGGCTAGCTGCTGAGACCAGTTCCATAATCATGTCGGTTAATTATCGTTTAGCGCCTG AAAGTCCTCTCCCAGCAGCTTATGATGATGGAATAAAGGCTCTGATGTGGTTAAAACAGCAAGCTCTAAGTGTTGGTGCTGATAATTGGTGGACTAGTCA GTGCAATTTCTCTAACATCTTTCTAGCTGGAGATAGTGCTGGCGCCAACATAGCCTATAACATCATCACGAGACCTGGTTCCTTTAATGCAGGACAAGCC GCTGCAGCCATGAAGCCATTAAGTCTCAGAGGCATTGTCTTGATACAGCCATTTTTCGGAGGAGAGGCACGCACTAATTCAGAAAAATACCTCGTACAAT CACCTCGCTCGGCGCTTAGCTTGGCAGCCTCTGATACATATTGGCGATTAGCTTTGCCTTGTGGATCTAACCGGGACCATCCATGGTGCAACCCTCTAGC CAAGGGGTTAGACGTGGAATTGGAGGATTTGTTGAGATTTCCAATAATGGTGTGCATATCAGAGATGGATATCTTGAAAGACAGGAGCTTGGAGTTTGTT GCTTCTTTGGATAGAGCTGGTAAAATGGTGGAGCATGTCGTTCATAAAGGGGTAGGGCACGCATTTCAGATTCTAAGCAAGTCCCAGCTCTCACGAACTC GAACATTGGAAATGATGTCACAAATCAAGGACTTCATTAGTGGAATATGA
AA sequence Show only first row Show all	>Potri.008G118400.1 pacid=42807084 polypeptide=Potri.008G118400.1.p locus=Potri.008G118400 ID=Potri.008G118400.1.v4.1 annot-version=v4.1 MGTRNVKDGLNLSLQIDKDCHQHGAVTEEIDGLIKVYEDEHVERPKIVPCVTSDLPHELGVTSRDVVIDKFTNIWARFYVSIKCHGKLPLLVYFHGGGFC VGSAAWSCYHDFLARLAAETSSIIMSVNYRLAPESPLPAAYDDGIKALMWLKQQALSVGADNWWTSQCNFSNIFLAGDSAGANIAYNIITRPGSFNAGQA AAAMKPLSLRGIVLIQPFFGGEARTNSEKYLVQSPRSALSLAASDTYWRLALPCGSNRDHPWCNPLAKGLDVELEDLLRFPIMVCISEMDILKDRSLEFV ASLDRAGKMVEHVVHKGVGHAFQILSKSQLSRTRTLEMMSQIKDFISGI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G68620			alpha/beta-Hydrolases superfam...		Potri.008G118400 [exp]	0	1
AT5G05600			2-oxoglutarate (2OG) and Fe(II...		Potri.006G101200 [exp]	3.31	0.9998
					Potri.007G014501 [exp]	4.47	0.9998
AT3G11840		PUB24	plant U-box 24 (.1)		Potri.009G016100 [exp]	4.89	0.9996
AT5G05600			2-oxoglutarate (2OG) and Fe(II...		Potri.006G101100 [exp]	5.29	0.9994
AT3G07820			Pectin lyase-like superfamily ...		Potri.019G067133 [exp]	5.47	0.9998
AT5G52400		CYP715A1	"cytochrome P450, family 715, ...		Potri.015G145100 [exp]	5.65	0.9989
					Potri.006G038300 [exp]	7.61	0.9920
					Potri.017G120650 [exp]	8.94	0.9998
AT3G07820			Pectin lyase-like superfamily ...		Potri.019G067100 [exp]	9.48	0.9998
AT5G44400			FAD-binding Berberine family p...		Potri.011G160400 [exp]	10.95	0.9986

Compare expression of checked genes

Potri.008G118400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.