Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G25480 646 / 0 Aluminium activated malate transporter family protein (.1) AT2G17470 603 / 0 AtALMT6, ALMT6 ALuminium activated Malate Transporter 6, Aluminium activated malate transporter family protein (.1) AT3G18440 601 / 0 ATALMT9 aluminum-activated malate transporter 9 (.1) AT1G68600 598 / 0 Aluminium activated malate transporter family protein (.1) AT1G18420 542 / 0 Aluminium activated malate transporter family protein (.1) AT5G46610 241 / 1e-72 Aluminium activated malate transporter family protein (.1.2.3) AT4G17970 238 / 3e-71 ATALMT12, ALMT12 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) AT5G46600 230 / 3e-68 Aluminium activated malate transporter family protein (.1) AT1G08430 217 / 5e-64 ALMT1, ATALMT1 ARABIDOPSIS THALIANA ALUMINUM-ACTIVATED MALATE TRANSPORTER 1, aluminum-activated malate transporter 1 (.1) AT1G08440 211 / 1e-61 Aluminium activated malate transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G053400 [exp] 650 / 0 AT3G18440 681 / 0.0 aluminum-activated malate transporter 9 (.1) Potri.010G127400 [exp] 599 / 0 AT3G18440 588 / 0.0 aluminum-activated malate transporter 9 (.1) Potri.001G097300 [exp] 300 / 5e-95 AT3G18440 307 / 2e-97 aluminum-activated malate transporter 9 (.1) Potri.003G134100 [exp] 298 / 1e-94 AT3G18440 306 / 2e-97 aluminum-activated malate transporter 9 (.1) Potri.001G144300 [exp] 245 / 4e-74 AT4G17970 634 / 0.0 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) Potri.001G217300 [exp] 238 / 7e-72 AT1G08440 407 / 2e-138 Aluminium activated malate transporter family protein (.1) Potri.009G017800 [exp] 238 / 7e-72 AT2G27240 451 / 2e-155 Aluminium activated malate transporter family protein (.1) Potri.001G217400 [exp] 234 / 1e-70 AT1G08440 451 / 2e-155 Aluminium activated malate transporter family protein (.1) Potri.009G017900 [exp] 228 / 3e-68 AT1G08440 389 / 3e-131 Aluminium activated malate transporter family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027657 [exp] 572 / 0 AT3G18440 711 / 0.0 aluminum-activated malate transporter 9 (.1) Lus10021694 [exp] 569 / 0 AT1G25480 524 / 0.0 Aluminium activated malate transporter family protein (.1) Lus10034301 [exp] 504 / 2e-174 AT3G18440 555 / 0.0 aluminum-activated malate transporter 9 (.1) Lus10039926 [exp] 344 / 3e-115 AT3G18440 403 / 6e-138 aluminum-activated malate transporter 9 (.1) Lus10035037 [exp] 269 / 5e-84 AT1G25480 295 / 3e-94 Aluminium activated malate transporter family protein (.1) Lus10024710 [exp] 260 / 4e-81 AT3G18440 296 / 1e-94 aluminum-activated malate transporter 9 (.1) Lus10004556 [exp] 256 / 3e-78 AT4G17970 649 / 0.0 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) Lus10000898 [exp] 246 / 1e-74 AT4G17970 666 / 0.0 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) Lus10030975 [exp] 240 / 4e-72 AT4G17970 643 / 0.0 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) Lus10013577 [exp] 226 / 2e-67 AT3G11680 524 / 0.0 Aluminium activated malate transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0307 [poplar] [flax] FUSC PF11744 [poplar] [flax] ALMT Aluminium activated malate transporter
Representative CDS sequence Show only first row Show all	>Potri.008G118600.1 pacid=42806153 polypeptide=Potri.008G118600.1.p locus=Potri.008G118600 ID=Potri.008G118600.1.v4.1 annot-version=v4.1 ATGGCTGCCAAAATCGGATCTCTTAGGCACAGCTTTGAAGAAAGGAGCAAGGAGAGGTTGATTTCTAGAAAAGAATATCCCGACTTTGGCCTGAACCGCT CCGAGAATGATATTGAAGAAGCTGGCAAATGCCGGTGCTTTGGATCACTATCTGATAGGATCGTCAGCTTCTGGAATGGTGTAAGAAATTCTGCTATTGA ATTATATAAGATGGGCCAAGCAGATCCTCGAAAATATCTTTTCGCTGTCAAGATGGGCCTGTCTCTAGCTCTTGTTTCCCTAGTCATATTCTTAAAAGAG CCTCTCAAGGACGTTAGCCAGTACTCAATCTGGGCAATTCTGACAGTTGTCGTCGTTTTTGAATTCAGTGTAGGAGCAACGCTTAACAAAGGATTCAATC GTGCTTTAGGGACATTTTCTGCTGGTGCTCTGGCTATTGGCATTGCAGAGCTCTCTTTGCATGTTGGAGCTTTGGGAGAAGTTCTTCTCGTAGTCAGTAT TTTCATCGCAGGATTTTTTGCAAGCTATATAAAACTGTACCCTACCATGAAGCCTTATGAATACGGATTCAGGGTATTCTTGCTGACATACTGCATAGTA ACGGTGTCTGGGAGCTCATCGTCATTTTTCCACACAGCTGTTTATAGACTGTTGCTCATTGCTGTTGGGGCTGCGATATGCTTGGCTGTAAATATTTGTA TATTTCCCATATGGGCAGGGGAGGATCTTCACAAATTAGTGGTGAAAAACTTCAACGGTGTTGCTAATTCTTTGGAAGGTTGTGTAAATGGATATTTGCA ATGTGTGGAATATGAGAGAATCCCTTCAAAGATTTTAACATACGAAGCTTCTGATGACCCATTGTATAGCGGCTATAGATCTGCTGTGCAATCTACCAGC CAAGAGGAATCTCTATTGAGCTTTGCAATTTGGGAGCCTCCTCATGGTCCTTATAGATCCTTCAACTATCCTTGGAAAAACTATGTAAAATTAAGCGGAT CATTGAGGCACTGTGCATTTATGGTCATGGCAATGCATGGATCCATACTTTCTGAAATTCAGGCACCGCCTGAAAAGAGACAAGTTTTCAGTAGTGAGCT TCAAAGAGTTGGCAATGAAGGAGCGAAAGTGTTGCGTGAACTTGGAAAAAAAGTAGAGAAGATGGAAAAGTTAGGTCCCGGAGTAGACGTGCTGCTAGAA GTGCACGAGGCAGCAGAAGAGCTGCAAATGAAGATAGATCAAAATTCCTACCTACTGGTCAATTCAGAAAGCTGGGCAGCTGGAAGACCAGCCAAGGAAT TTGAAGATCCGCAGAACCTCTTGGAAGACGAAAGTAAACTAATTAGCTACCTTAGCGAAACATGGGATGTTAAGAATCAAAATATAAGCACCAGTCCTTC CATGCCAGAATTGAAAGCCTCGGATAGCGTGTTCAATCAGCCAGTATCGTGGCCCCGTCTCTCATTTACAGGTGGTTCCATGATCGTTGAACAAGAATCG AAAGTATACGAGAGTGCAAGCTCCTTGTCCTTGGCAACATTCGCATCATTGCTGATAGAGTTTGTAGCAAGGCTACAAAATCTTGCGGATGAATTTCAAG AGCTTAGCGAGAAAGCAAATTTCAAGGAACCCAGATACGGATTGGTGGAAAAAATGGCAGTTGGAGTTTAA
AA sequence Show only first row Show all	>Potri.008G118600.1 pacid=42806153 polypeptide=Potri.008G118600.1.p locus=Potri.008G118600 ID=Potri.008G118600.1.v4.1 annot-version=v4.1 MAAKIGSLRHSFEERSKERLISRKEYPDFGLNRSENDIEEAGKCRCFGSLSDRIVSFWNGVRNSAIELYKMGQADPRKYLFAVKMGLSLALVSLVIFLKE PLKDVSQYSIWAILTVVVVFEFSVGATLNKGFNRALGTFSAGALAIGIAELSLHVGALGEVLLVVSIFIAGFFASYIKLYPTMKPYEYGFRVFLLTYCIV TVSGSSSSFFHTAVYRLLLIAVGAAICLAVNICIFPIWAGEDLHKLVVKNFNGVANSLEGCVNGYLQCVEYERIPSKILTYEASDDPLYSGYRSAVQSTS QEESLLSFAIWEPPHGPYRSFNYPWKNYVKLSGSLRHCAFMVMAMHGSILSEIQAPPEKRQVFSSELQRVGNEGAKVLRELGKKVEKMEKLGPGVDVLLE VHEAAEELQMKIDQNSYLLVNSESWAAGRPAKEFEDPQNLLEDESKLISYLSETWDVKNQNISTSPSMPELKASDSVFNQPVSWPRLSFTGGSMIVEQES KVYESASSLSLATFASLLIEFVARLQNLADEFQELSEKANFKEPRYGLVEKMAVGV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G25480			Aluminium activated malate tra...		Potri.008G118600 [exp]	0	1
AT2G29380		HAI3	highly ABA-induced PP2C gene 3...		Potri.001G245200 [exp]	4.89	0.8284
AT1G68570			Major facilitator superfamily ...		Potri.010G126300 [exp]	7.74	0.8259
AT5G17230		PSY	PHYTOENE SYNTHASE (.1.2.3)		Potri.017G138900 [exp]	13.56	0.8036
AT4G34000	bZIP	AtABF3, ABF3, D...	DC3 PROMOTER-BINDING FACTOR 5,...		Potri.004G140600 [exp]	17.54	0.7822	ABF1.1
AT5G67400		RHS19	root hair specific 19 (.1)		Potri.007G053400 [exp]	19.44	0.7877
AT4G03020			transducin family protein / WD...		Potri.014G136000 [exp]	21.49	0.7949
AT2G31820			Ankyrin repeat family protein ...		Potri.017G006800 [exp]	23.45	0.8000
AT5G17860		CAX7	calcium exchanger 7 (.1)		Potri.013G065800 [exp]	26.53	0.8152
AT3G53570		AME2, AFC1	FUS3-complementing gene 1 (.1....		Potri.006G213400 [exp]	30.29	0.7550	Pt-AFC1.2
AT3G27250			unknown protein		Potri.001G334500 [exp]	32.40	0.7798

Compare expression of checked genes

Potri.008G118600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.