Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13330 357 / 2e-126 AHP2 Arabidopsis Hop2 homolog (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G127101 [exp] 162 / 8e-51 AT1G13330 145 / 4e-44 Arabidopsis Hop2 homolog (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021690 [exp] 215 / 9e-72 AT1G13330 190 / 4e-62 Arabidopsis Hop2 homolog (.1) Lus10035033 [exp] 215 / 9e-72 AT1G13330 192 / 9e-63 Arabidopsis Hop2 homolog (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF07106 [poplar] [flax] TBPIP TBPIP/Hop2 winged helix domain
Representative CDS sequence Show only first row Show all	>Potri.008G118800.1 pacid=42807289 polypeptide=Potri.008G118800.1.p locus=Potri.008G118800 ID=Potri.008G118800.1.v4.1 annot-version=v4.1 ATGGCCCCGAAATCCGATAGCGCCGAAGCTATCGTGCTGAACTTCGTGAATGAGCAAAATAAGCCATTGAACTCTCAAAACGTGGCCGATTCATTGCAAA AGTTTAACCTAAAGAAGGCAGGGATACAGAAAGCACTAGATAATCTTGCGGATAACGGGAAGATTTCGTTTAAGGAGTATGGTAAGCAGAAGATATACCT TGCCCGGCAAGACCAGTTTGATATTCCCACCAGCGAAGAGCTTAATCAGATGAAAGAAGAAAATGCACAAGTTCAGCAACAGCTGGATGAGCAGAAGAGA GCAATTAGTGAGGTTGAGGGAGAAATTAAAAACTTGCAGTCGAATCTGACGCTTGAACAGATACGTCACAAAGAAGCCAAGCTGCAGAAGGAGGTTAAAG AAATGGAAGATAAATTGGTAAAATTGCGCAAAGGAGTTACCTTGGTCAGGCCAGAAGAGCGGAAGGCAATTGCGGAAATGTATTCAGAGAAATTAAGTCA GTGGAGAAAGCGGAAAAGGATGTTCAAGGATGTGTGGGATGCTATAACTGAGAACTTACCAAAGGATCTAAAAGAATTTAAGGAAGAACTTGGACTTGAA TATGACGAAGATGTTGGTGTGAGCTTGCAGTCTTTCAGTGGCCTGCTGCAACATGGCAAGAAGCGAACCAGAGACCAGTAA
AA sequence Show only first row Show all	>Potri.008G118800.1 pacid=42807289 polypeptide=Potri.008G118800.1.p locus=Potri.008G118800 ID=Potri.008G118800.1.v4.1 annot-version=v4.1 MAPKSDSAEAIVLNFVNEQNKPLNSQNVADSLQKFNLKKAGIQKALDNLADNGKISFKEYGKQKIYLARQDQFDIPTSEELNQMKEENAQVQQQLDEQKR AISEVEGEIKNLQSNLTLEQIRHKEAKLQKEVKEMEDKLVKLRKGVTLVRPEERKAIAEMYSEKLSQWRKRKRMFKDVWDAITENLPKDLKEFKEELGLE YDEDVGVSLQSFSGLLQHGKKRTRDQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G13330		AHP2	Arabidopsis Hop2 homolog (.1)		Potri.008G118800 [exp]	0	1
AT5G18920			Cox19-like CHCH family protein...		Potri.010G028000 [exp]	5.09	0.8131
AT4G39520			GTP-binding protein-related (....		Potri.007G080900 [exp]	12.68	0.7454
AT5G57460			unknown protein		Potri.006G168200 [exp]	12.84	0.7786
AT3G49100			Signal recognition particle, S...		Potri.005G219400 [exp]	13.56	0.7823
AT4G01710		ARPC5, CRK	CROOKED, ARP2/3 complex 16 kDa...		Potri.002G136500 [exp]	16.97	0.7775	CRK.2
AT5G27200		ACP5	acyl carrier protein 5 (.1)		Potri.005G044800 [exp]	19.39	0.7758	Pt-ACP1.1
AT5G07960			unknown protein		Potri.015G056300 [exp]	19.51	0.7850
AT3G55490			GINS complex protein (.1)		Potri.008G068100 [exp]	21.16	0.7393	TTN10.1
AT1G56423			unknown protein		Potri.005G017400 [exp]	22.80	0.7692
AT2G19450		RDS1, DGAT1, AT...	TRIACYLGLYCEROL BIOSYNTHESIS D...		Potri.006G147600 [exp]	25.09	0.7493

Compare expression of checked genes

Potri.008G118800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.