Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42740 973 / 0 Sugar isomerase (SIS) family protein (.1) AT4G24620 146 / 1e-37 PGI1 phosphoglucose isomerase 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G104000 [exp] 145 / 5e-37 AT4G24620 1006 / 0.0 phosphoglucose isomerase 1 (.1.2) Potri.002G262101 [exp] 85 / 6e-20 AT5G42740 71 / 6e-16 Sugar isomerase (SIS) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007154 [exp] 1008 / 0 AT5G42740 953 / 0.0 Sugar isomerase (SIS) family protein (.1) Lus10010808 [exp] 764 / 0 AT5G42740 440 / 3e-149 Sugar isomerase (SIS) family protein (.1) Lus10000767 [exp] 133 / 1e-32 AT4G24620 1018 / 0.0 phosphoglucose isomerase 1 (.1.2) Lus10015959 [exp] 0 / 1 AT4G24620 959 / 0.0 phosphoglucose isomerase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0067 [poplar] [flax] SIS PF00342 [poplar] [flax] PGI Phosphoglucose isomerase
Representative CDS sequence Show only first row Show all	>Potri.008G118900.2 pacid=42806625 polypeptide=Potri.008G118900.2.p locus=Potri.008G118900 ID=Potri.008G118900.2.v4.1 annot-version=v4.1 ATGGCTTCATCGACTTTAATTTGCGAAACCCAGCCATGGAAGGACTTGAAGTCTCATGTTGAGGACATTAAGAAGACTCATTTACGCGAGTTGTTGAGTG ACACCGACCGATGCAAGTCAATGGTGGTTGATTTTGATGGAATAACGCTTGACTACTCACGCCAACGAGCCACCCCTGGTACCATGGATAACCTTTATAA TCTGGCAGAGGCAGCTCATCTCAAGGAAAAGATTGATCGCATGTTCAATGGGGAGCATATAAACAGCACTGAGAATAGGTCAGTGCTTCATGTAGCTCTT CGTGCTCCAAGGGATGCAGTTATGCAAAGTGATGGCAAGAATGTTGTACCAGATGTCTGGAATGTTCTGGACAAGATCAAGGATTTCTCTGAGAGGGTCC GCAATGGTTCTTGGGTTGGAGCCACAGGAAAAGCACTTACTGATGTTATTTCAGTCGGCATTGGTGGCAGCTTCCTGGGTCCTCTTTTTGTGCATACCGC TCTTCAAACAGATCCAGAGGCCAGCAAATGTGCTACAGGACGCCAATTGCGATTTCTTGCAAATGTAGATCCTATTGATGTTGCTAGAAATACTGCAGGC CTCAAACCTGAGACTACTCTCGTTGTTGTGGTTTCAAAGACTTTTACCACAGCTGAAACTATGCTGAATGCTCGAACACTAAGGGCATGGATTTCAAAAG AACTCGGACCATCTGCAGTTGCCAAGCATATGGTTGCAGTTAGCACTAATCTTACGCTTGTGGAAAAGTTTGGCATTGATCCTAACAATGCTTTTGCATT CTGGGACTGGGTTGGTGGAAGATATAGTGTCTGTAGTGCTGTTGGCGTGTTACCTTTGTCTCTCCAATATGGTTTCACAGTTGTTGATAAGTTCTTGAAA GGAGCATCAAGCATTGATCAGCATTTCTATTCTGCACCATTTGAGAAAAATCTACCTGTACTTCTAGGTATGTTGAGCGTGTGGAATGTTTCATTTTTTG GATATCCTGCAAGAGCCATCTTACCTTATTCTCAAGCCCTGGAGAAATTTGCACCGCACATCCAGCAGGTCAGCATGGAAAGTAATGGCAAGGGGGTATC TATTGATGGTAAACCACTTCCCTTTGAAACTGGTGAAATTGATTTTGGTGAACCAGGAACAAATGGTCAGCATAGCTTTTATCAACTAATTCACCAGGGA CGTGTGATTCCCTGTGACTTTATTGGTGTTGTGAAGAGTCAGCAACCGGTATACCTAGAAGGAGAGGTTGTAAATAACCATGATGAACTCATGTCCAACT TTTTCGCCCAGCCAGATGCCCTTGCATACGGGAAGACACCAGAAGAGTTGCAAAAAGAGAATGTTCTGCAGCATCTCATACCTCACAAGACCTTCTCTGG CAATAGGCCTTCTCTCAGCCTTCTGCTCTCTTCATTGGATGCTTACAAAATTGGACAGTTGTTGGCGATCTATGAACACAGAGTTGCTGTGCAAGGCTTC ATATGGGGCATCAATTCTTTTGACCAGTGGGGAGTTGAGTTAGGAAAGTCGTTGGCTACTCAAGTTAGAAAGCAACTTCATGCATCTCGTGTGAAGGGAG AACCAGTTGAGGGTTTTAATTTCAGCACTACAACAATGCTAACAAAATATCTGAAGGAAAGTTTGGAAGTTCCAGCCAATCCTCCAACAATTCTTCCTCG GATATAA
AA sequence Show only first row Show all	>Potri.008G118900.2 pacid=42806625 polypeptide=Potri.008G118900.2.p locus=Potri.008G118900 ID=Potri.008G118900.2.v4.1 annot-version=v4.1 MASSTLICETQPWKDLKSHVEDIKKTHLRELLSDTDRCKSMVVDFDGITLDYSRQRATPGTMDNLYNLAEAAHLKEKIDRMFNGEHINSTENRSVLHVAL RAPRDAVMQSDGKNVVPDVWNVLDKIKDFSERVRNGSWVGATGKALTDVISVGIGGSFLGPLFVHTALQTDPEASKCATGRQLRFLANVDPIDVARNTAG LKPETTLVVVVSKTFTTAETMLNARTLRAWISKELGPSAVAKHMVAVSTNLTLVEKFGIDPNNAFAFWDWVGGRYSVCSAVGVLPLSLQYGFTVVDKFLK GASSIDQHFYSAPFEKNLPVLLGMLSVWNVSFFGYPARAILPYSQALEKFAPHIQQVSMESNGKGVSIDGKPLPFETGEIDFGEPGTNGQHSFYQLIHQG RVIPCDFIGVVKSQQPVYLEGEVVNNHDELMSNFFAQPDALAYGKTPEELQKENVLQHLIPHKTFSGNRPSLSLLLSSLDAYKIGQLLAIYEHRVAVQGF IWGINSFDQWGVELGKSLATQVRKQLHASRVKGEPVEGFNFSTTTMLTKYLKESLEVPANPPTILPRI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G42740			Sugar isomerase (SIS) family p...		Potri.008G118900 [exp]	0	1
AT2G03270			DNA-binding protein, putative ...		Potri.006G054600 [exp]	1.41	0.6567
AT1G11200			Protein of unknown function (D...		Potri.004G035900 [exp]	14.31	0.5333
AT2G21820			unknown protein		Potri.010G176200 [exp]	17.83	0.5787	PM41.1
AT5G10780			unknown protein		Potri.018G016800 [exp]	62.32	0.4879
AT5G42990		UBC18	ubiquitin-conjugating enzyme 1...		Potri.005G232100 [exp]	94.99	0.4681
AT5G11950		LOG8	LONELY GUY 8, Putative lysine ...		Potri.003G219300 [exp]	147.67	0.4342

Compare expression of checked genes

Potri.008G118900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.