Plant FIBer expression Database

Potri.008G119100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G25840 695 / 0 Protein kinase superfamily protein (.1.2)
AT1G13350 645 / 0 Protein kinase superfamily protein (.1.2)
AT3G53640 587 / 0 Protein kinase superfamily protein (.1)
AT2G40120 180 / 1e-47 Protein kinase superfamily protein (.1)
AT1G73450 172 / 2e-43 Protein kinase superfamily protein (.1)
AT3G17750 172 / 2e-43 Protein kinase superfamily protein (.1)
AT1G73460 171 / 2e-43 Protein kinase superfamily protein (.1)
AT4G24740 159 / 1e-41 AME1, AFC2 FUS3-complementing gene 2 (.1.2)
AT4G32660 157 / 1e-41 AME3 Protein kinase superfamily protein (.1.2.3)
AT5G35980 157 / 2e-39 YAK1 yeast YAK1-related gene 1 (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G126900
[exp]
1229 / 0 AT3G25840 727 / 0.0 Protein kinase superfamily protein (.1.2)
Potri.008G069000
[exp]
182 / 1e-47 AT2G40120 607 / 0.0 Protein kinase superfamily protein (.1)
Potri.010G188400
[exp]
182 / 1e-47 AT2G40120 576 / 0.0 Protein kinase superfamily protein (.1)
Potri.006G244400
[exp]
166 / 2e-44 AT4G32660 634 / 0.0 Protein kinase superfamily protein (.1.2.3)
Potri.012G039700
[exp]
172 / 2e-43 AT1G73460 1343 / 0.0 Protein kinase superfamily protein (.1)
Potri.016G079900
[exp]
158 / 2e-41 AT3G53570 732 / 0.0 FUS3-complementing gene 1 (.1.2.3.4)
Potri.015G033400
[exp]
164 / 4e-41 AT1G73460 1356 / 0.0 Protein kinase superfamily protein (.1)
Potri.013G075300
[exp]
162 / 1e-40 AT5G35980 1134 / 0.0 yeast YAK1-related gene 1 (.1.2)
Potri.006G213400
[exp]
153 / 7e-40 AT3G53570 720 / 0.0 FUS3-complementing gene 1 (.1.2.3.4)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10021688
[exp]
782 / 0 AT3G25840 736 / 0.0 Protein kinase superfamily protein (.1.2)
Lus10035031
[exp]
513 / 4e-165 AT3G25840 465 / 6e-151 Protein kinase superfamily protein (.1.2)
Lus10040203
[exp]
182 / 3e-47 AT2G40120 590 / 0.0 Protein kinase superfamily protein (.1)
Lus10028283
[exp]
180 / 3e-47 AT2G40120 587 / 0.0 Protein kinase superfamily protein (.1)
Lus10031902
[exp]
167 / 8e-42 AT1G73450 1318 / 0.0 Protein kinase superfamily protein (.1)
Lus10026360
[exp]
165 / 2e-41 AT1G73460 680 / 0.0 Protein kinase superfamily protein (.1)
Lus10042297
[exp]
165 / 3e-41 AT1G73450 1335 / 0.0 Protein kinase superfamily protein (.1)
Lus10024431
[exp]
155 / 2e-40 AT3G53570 732 / 0.0 FUS3-complementing gene 1 (.1.2.3.4)
Lus10025301
[exp]
154 / 5e-40 AT3G53570 726 / 0.0 FUS3-complementing gene 1 (.1.2.3.4)
Lus10043309
[exp]
151 / 4e-39 AT4G24740 730 / 0.0 FUS3-complementing gene 2 (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0016 PKinase PF07714 PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence
>Potri.008G119100.4 pacid=42808319 polypeptide=Potri.008G119100.4.p locus=Potri.008G119100 ID=Potri.008G119100.4.v4.1 annot-version=v4.1
ATGGCGAGCGACTCCGATGCCTCACGTCGCAAGCACCGAGGATCTTCCTCCGATGACGAGGTGGAGAAGTCCTCGAAGCGCCAGAAACATCGTCACCATC
ATCACCGACATCACCGCCATCGTAGCAAGAAGCACGGAGGGGATACCAAGCAAGGCGGTGAAGAAATCGCTCCTCCTACTCTTCCTCCTCCGGTTCCTGT
TGCGCATAGTAATAGAGCTGATAACGATGACGTGGAGGAAGGGGAAATTCTTGAGGAGGAAGGTTTTGGTGGTGTCGATATCAAGGCCAATGAATTACGT
GAGGAAATAACTGATTCTCAAAATCTGCAGGGATTTGACAAGAAAGACAATGGTTTCGTGAGTAATCAACTAGTTGTTGATAAGTTTGACAATGATGTCA
GCTTTCAAAGAGATTCTAAGGCTGAGCTTCAAGATGAGTTAGTTTCTAAAATTGACTCAGAGGATCTTATCAAAGGTAGTTTGGGTCACAAAAACCATAC
AGATGACAAGAAGAGGCATGGGGAATCTAGATACCCTTCAAAAGGAAGTAAGCGAAAGAATAACCGGGATATTGACCCAACTGAGGGTGATGATAGCAAA
TTAAAGGATTGGAAGAAGTCACCATCATCTGAAAGCAGCGAGGACAAGCATAAGAGGGCACGTTCACCATCACATGATAAGTATCATGATGAGATTCATG
CTAGAAGTAGATCAATGTCACGAGATATAGTTAGGGAGAGATCTCGTTCCCGTAGTGTAATTGAAGATGAGGCTCTTTTGAGAAGAAAAAGACACCATGA
CAGGATTGAGAATGACTCTTATGATGAAAGAATGTCTAGATACAGCAGGAATTTGCGGCACAACATTGGAGATTCAGTGAGAAATGTGGATAGGGAATGG
AGTGTTAGTTACATCAAGTCTTTTGATGGAGAAGAATGGCATCACAATAAGGATGCACCGGACGGAGAGAGGAGCAGGGAGAGGGAGAGGGAACGGAGAA
GAGAGAAGGAACAAGAGAGAAGCAGGGAGAGAGAGGTTGACAGGGATAGGAGAAGGGAGATGGAAAATGAGAGGAGCAAGGAAAGCGATTGGAGAAGGGA
GAAGGAACAAGATAGGGAGCTAGATGGGGAAAGGAGGAGGGAGAAAGGACAGGAGAGGAGTAGGGACAGGGTGGAGGAGATAGATAGAAAAAAACGGATG
GAAACAGATATGACCAAACACAAAAATATGCAAAGGGCTAGCAACAGAGATAGAGATAAGGAGAGAGAAAGGGAGAATGGTAGAGATAGGTACAGAGAAA
GGGATAGAGCTAGGGACCATGACAGTGGAAAAGAACGGGACAGGGAGAGGCGAAATGACAGGGATAGGGATAGGGAGAAATCTAGGGTTATTAAGAGCAA
TTCAGAGAAATTTTATAATTCCAACAGTAATTTGTTAGGACAGGGAAGAGACAATCTAAACAGAGATGAAGATGACCAAGATGATTTTGAAGAAAGGATT
GCACTGAAATTAGCTGAACAGGAAGAGGATAATCTTGATAGAATAAAGGAGGAGAGTAGAAAGCGAAGGGATGCCATTCTTGAAAAATATAGAAATCAGC
AGTTGCAGCAGCTGAAAGAGTCTGGATCAGAAGATGCAGACAAAAACAAGGAGCCTATAGAAGGTTCTGGCCAATCAGCAGCAGCTGACAATGTTGCTCC
AGAAACTCTTGATGGTAGGACTGATGGTGCTGATGTTTATGTTATCGAGACATCATTTTCTGTGGGGAAATCACCTTTACAAAATGGAATACAAGCTTCC
AAGAGGACTTCAGGAACTACAGGGCTTGGAGAGGGTTCGCCAAAGAGTGAGAGATCAGATGAAAAATTATGTGATGATATTTTTGGAGAGACTCCTGTTG
GAGTTTGTAAATCGGGTAAAGGAGATGAAAAATATTGTGATGATATTTTTGGAGAGACTCCTGTTGGAGTTCGTAAAACGGGTAAAGGAGAGGGTTTGCC
AATCGTGAGGAGTGGTCTTCATGACAATTGGGATGATCCTGTAGGATATTATAGCCACCGATTTGGAGAAGTACTTGATGGTCGATATGAGATTGTTGCT
GCTCATGGAAAAGGTGTCTTTTCTACAGTAGTTCGCGCAAGGGATCTGAACGCTGGCATTGATGAACCTGAAGAAGTGGCTATAAAAATTATACGCAACA
ATGAAACAATGCGTAAGGCTGGTGATACAGAGGTTTCAATATTGAAGAAATTAGCAGGTCAAGATCCAGAGAACAAGCGTCACTGTGTTCGTTTTCTTTC
AAGTTTCAAGTATAGAAACCATCTTTGTTTAGTTTTTGAATCTCTTCATATGAACCTGCGTGAGGTCCTAAAAAAGTTTGGTCGAGATATTGGCCTTAAA
CTAACTGCTGTTAGGGCATATGCGAAGCAGCTTTTTATTGCTCTGAAGCATCTAAGGAACTGTGGTGTTCTTCACAGTGATATAAAGCCTGATAATATGC
TTGTAAATGAGGCAAAAAATGTGCTGAAGCTTTGTGATTTCGGTAATGCGATGTTTTCTGGTAAAAATGAAATTACACCGTACCTTGTAAGCCGATTTTA
TCGTGCTCCTGAAATAATTCTTGGTTTGCCGTATGATCATCCGATGGATATGTGGTCTGTTGGTTGCTGCTTGTATGAACTTTATTCTGGAAAAGTTCTT
TTTCCAGGTTCTACAAACAATGACATGCTACGACTTCACATGGAATTGAAGGGCCCTTTCCCAAAGAAGATGCTTAAGAAGGGTGCATTTGTTGACCAGC
ATTTTGATAATGATTTGAATTTTCATGCTACAGAGGAAGATCCTGTTACTAAAAAGATTATGAAAAAGATTATTGTGAACATAAAGGCAAAGGATGTTGG
GTCTATTATTTCTGGCTCTCCTGGTGAGGATCCAAAGATGCTAGCAAACTTTAAAGATCTTCTAGAAAAAATCTTTGTGTTGGATCCTGAGAAGAGGATG
ACAGTTTATCAAGCACTAGCTCACCCATTCATCACGGGCAAGTGA
AA sequence
>Potri.008G119100.4 pacid=42808319 polypeptide=Potri.008G119100.4.p locus=Potri.008G119100 ID=Potri.008G119100.4.v4.1 annot-version=v4.1
MASDSDASRRKHRGSSSDDEVEKSSKRQKHRHHHHRHHRHRSKKHGGDTKQGGEEIAPPTLPPPVPVAHSNRADNDDVEEGEILEEEGFGGVDIKANELR
EEITDSQNLQGFDKKDNGFVSNQLVVDKFDNDVSFQRDSKAELQDELVSKIDSEDLIKGSLGHKNHTDDKKRHGESRYPSKGSKRKNNRDIDPTEGDDSK
LKDWKKSPSSESSEDKHKRARSPSHDKYHDEIHARSRSMSRDIVRERSRSRSVIEDEALLRRKRHHDRIENDSYDERMSRYSRNLRHNIGDSVRNVDREW
SVSYIKSFDGEEWHHNKDAPDGERSRERERERRREKEQERSREREVDRDRRREMENERSKESDWRREKEQDRELDGERRREKGQERSRDRVEEIDRKKRM
ETDMTKHKNMQRASNRDRDKERERENGRDRYRERDRARDHDSGKERDRERRNDRDRDREKSRVIKSNSEKFYNSNSNLLGQGRDNLNRDEDDQDDFEERI
ALKLAEQEEDNLDRIKEESRKRRDAILEKYRNQQLQQLKESGSEDADKNKEPIEGSGQSAAADNVAPETLDGRTDGADVYVIETSFSVGKSPLQNGIQAS
KRTSGTTGLGEGSPKSERSDEKLCDDIFGETPVGVCKSGKGDEKYCDDIFGETPVGVRKTGKGEGLPIVRSGLHDNWDDPVGYYSHRFGEVLDGRYEIVA
AHGKGVFSTVVRARDLNAGIDEPEEVAIKIIRNNETMRKAGDTEVSILKKLAGQDPENKRHCVRFLSSFKYRNHLCLVFESLHMNLREVLKKFGRDIGLK
LTAVRAYAKQLFIALKHLRNCGVLHSDIKPDNMLVNEAKNVLKLCDFGNAMFSGKNEITPYLVSRFYRAPEIILGLPYDHPMDMWSVGCCLYELYSGKVL
FPGSTNNDMLRLHMELKGPFPKKMLKKGAFVDQHFDNDLNFHATEEDPVTKKIMKKIIVNIKAKDVGSIISGSPGEDPKMLANFKDLLEKIFVLDPEKRM
TVYQALAHPFITGK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G25840 Protein kinase superfamily pro... Potri.008G119100
[exp]
0 1
Potri.005G043825
[exp]
2.00 0.9612
AT4G35540 zinc ion binding;transcription... Potri.004G084700
[exp]
2.44 0.9570
AT5G40450 unknown protein Potri.001G345300
[exp]
2.44 0.9444
AT1G20920 P-loop containing nucleoside t... Potri.005G257400
[exp]
4.47 0.9461
AT3G25840 Protein kinase superfamily pro... Potri.010G126900
[exp]
4.47 0.9473
AT3G51650 unknown protein Potri.006G107500
[exp]
6.92 0.9282
AT3G15120 P-loop containing nucleoside t... Potri.011G141400
[exp]
7.00 0.9432
AT1G17070 GC-rich sequence DNA-binding f... Potri.013G076000
[exp]
8.06 0.9251
Potri.003G148601
[exp]
8.94 0.9335
AT1G22310 ATMBD8, MBD8 methyl-CPG-binding domain 8 (.... Potri.005G164100
[exp]
9.38 0.9395

Potri.008G119100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.