Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68580 459 / 9e-154 agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein (.1), agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein (.2) AT5G55600 299 / 1e-91 agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein AT4G17330 60 / 7e-09 ATG2484-1 G2484-1 protein (.1) AT1G09320 57 / 4e-08 agenet domain-containing protein (.1) AT1G26540 53 / 6e-07 Agenet domain-containing protein (.1) AT5G58610 46 / 0.0001 PHD finger transcription factor, putative (.1) AT1G11420 45 / 0.0002 ATDUF2 DOMAIN OF UNKNOWN FUNCTION 724 2 (.1) AT4G19020 45 / 0.0003 CMT2 chromomethylase 2 (.1) AT5G23800 44 / 0.0005 ATDUF10 ,DUF 10 DOMAIN OF UNKNOWN FUNCTION 724 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G126700 [exp] 1027 / 0 AT1G68580 478 / 1e-160 agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein (.1), agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Potri.006G017400 [exp] 311 / 5e-96 AT5G55600 493 / 1e-166 agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein Potri.001G365800 [exp] 304 / 1e-93 AT5G55600 663 / 0.0 agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein Potri.016G007500 [exp] 293 / 2e-89 AT5G55600 491 / 7e-166 agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein Potri.003G077600 [exp] 69 / 9e-12 AT4G17330 773 / 0.0 G2484-1 protein (.1) Potri.001G157300 [exp] 61 / 5e-09 AT4G17330 726 / 0.0 G2484-1 protein (.1) Potri.013G006900 [exp] 56 / 6e-08 AT1G09320 268 / 1e-85 agenet domain-containing protein (.1) Potri.005G011100 [exp] 55 / 7e-08 AT1G09320 264 / 3e-84 agenet domain-containing protein (.1) Potri.009G072600 [exp] 51 / 3e-06 AT5G58610 453 / 1e-139 PHD finger transcription factor, putative (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007115 [exp] 290 / 1e-87 AT5G55600 606 / 0.0 agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein Lus10016606 [exp] 283 / 5e-85 AT5G55600 604 / 0.0 agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein Lus10003906 [exp] 278 / 4e-84 AT5G55600 455 / 3e-152 agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein Lus10007793 [exp] 77 / 4e-14 AT4G17330 508 / 1e-147 G2484-1 protein (.1) Lus10004730 [exp] 74 / 2e-13 AT4G17330 772 / 0.0 G2484-1 protein (.1) Lus10031429 [exp] 56 / 7e-08 AT1G09320 131 / 2e-33 agenet domain-containing protein (.1) Lus10000353 [exp] 56 / 1e-07 AT1G16890 313 / 3e-103 UBIQUITIN CONJUGATING ENZYME 13B, ubiquitin-conjugating enzyme 36 (.1.2.3) Lus10000615 [exp] 55 / 1e-07 AT1G16890 286 / 9e-95 UBIQUITIN CONJUGATING ENZYME 13B, ubiquitin-conjugating enzyme 36 (.1.2.3) Lus10017088 [exp] 54 / 2e-07 AT3G06520 283 / 1e-90 agenet domain-containing protein (.1) Lus10037805 [exp] 53 / 6e-07 AT3G06520 271 / 9e-86 agenet domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01426 [poplar] [flax] BAH BAH domain CL0049 [poplar] [flax] Tudor PF05641 [poplar] [flax] Agenet Agenet domain
Representative CDS sequence Show only first row Show all	>Potri.008G119400.4 pacid=42807253 polypeptide=Potri.008G119400.4.p locus=Potri.008G119400 ID=Potri.008G119400.4.v4.1 annot-version=v4.1 ATGGTGGAGAGGTTGGTGATTTGGTCGCCGGCGGAAATGGCGTTGGTGGGGTACGTGAGCTGGGAGGAGGTGAATGTGTCGAGCGATAAAGGAAGGAGAG AGGTGAAGTATTACCTGAAGAAAAACGACGGTGGAATAGATCTGGCTATTATAGGGAAAGAAAAGAGCTTGAGGCACATGTCTTATTATTTTGCAATTAG TATTCGGTCGAATTTTTATTCCATGACCCCCCCTGTGAAGCTCAAGTCCAGAAGAGAGGTTATTGATTGGCTCAATTCAATTGTTTCAGGTTCACTTCCT CATGAACCCTCCATCCAAGCAGGTTCCTTGGATAACAGTGATGCTTCTCGGTTGGATATGGAAACGTTTAAGGATAATCAGTCGCAGAAGCTGGGGCATT ATTATTCAGAATTTTTGTGGTTAGGTTCTCCATGGACTTGCAGGAAAAGAAAGAAGCATTATGAGTCTTTTTGCAGGAACGGTGTCAAAATTTCAGTTCA TGACTTTGTTTATGTCTTAGCTGAGGAGTCTAAACGACTAGTTGCTTACCTGGAAGACCTGTATGAGGATTCAAAAGGGAACAAAATGGTTATGGTACGC TGGTTTCACAAAATTGATGAGGTTGGTATTGTTTTGCCTCACAATTTTAATGACAGAGAGATTTTTTTTTCTCGTTGTCTTCAAGATCTCAGTATCGAAT GCATAGATGGATTGGCCATCGTCCTGAGTCCTCAGCATTTCAAGAAGTTCCTAAATGAGGCCGTACGTACTAGGTTCAATCCCTTTGTTTGCTACAAGCA GTTTGACAATGAAGAAGTCACACCCTTTGATATTACTCAAGTTGAAGGATACTGGAGCCAGGAAATTCTTAGGTATTTGACCATTCCTACTTCAAATTAT CTGGCAAATTCCCAGCATCCATTCAGTGGCTCGAGAGGGGAAGGAAATGATAATGATGCTAGTAGGATGAGACCTAAGAAGATGCTTCGCCGATCAAAAG ACAATGATGGTGTTTGCACTGGCAGCAAAGAATTGTTGACTGCAAGGTATATAAACATGCAAAGCTTTCATACTAGTAGGGTTGATGGCAAAACTGGATA TGCCTTTTTGTCCACAGCAGAGGTTATGCAAAATCCTCCTCAAAGTCTAAATGTTAGTTCTGAAGTTGAAGTGCTATCTCAGGACAGTGGGATTAGAGGT TGTTGGTTCAGAGCTTCAATAATTAAGAAGCACAAAGATAAGGTGAAGGTGAGATATCAAGATATTAGCGATGCAGCTAATGAAGCCCAGAAATTAGAGG AATGGGTTTTGGTTTCTAGGGTTGCTGCTCCTGACCAATTGGCTATCCGGATTAGTGGAAGGACTGTTGTCCGGCCCACGCCCCAGTTCAATAAAGGCCA AATGGCATCAGTTGCTGATGTTGGGACTGCTGTAGATGCTTGGTGGAACGATGCTTGGTGGGAAGGCATTGTTGTCCATAAGGAAACTGAAGATAGAATT CATGTTTTCTTCCCAGGAGTAAAGAAGGAATCAGTTTTTTGCTGTTCTGACCTGAGACTTTCCCTAGAATGGTTGGGAAATGCGTGGAAACATATCAAGG AAAGGCCAGATATTCTGTCACATTTATCATCCTGCTTGGAAAGAAAGCAAGTAACTTTCATATCTGATGAGAGCAAATTGGCCGAAGTTGCCATTCCTGG TTCCAGGCAGTCAGGAAAGGCCAACCCTGAATGTGGCGATTATCCTTTCGAAAGTAGACTTGATATGAGAAAAGAGGTGAAGGCGCTTCCAGATCTTTCG AAGGATAAGTTGCTTGCCCAATTGAGGTGGAGCTCAATAAAGAAGAGAAGACGTGGTAGTGGGAGTTCTGGCCATAAGATGCATCACAACAATAACGGTG GTCTAAGGTTATCAGAAGTTGTTGGATCCAATGCAGGTGAAAGATTTCTGATTCCAACTTCCTTGAAAGTTGATCACGAGAACTGCAAGTACATGGGGGA TTCTCTGTTTACTTGTGCTGTTGTGCAGCCTCTAACAGGCTTGGTTATGTCTAGATGA
AA sequence Show only first row Show all	>Potri.008G119400.4 pacid=42807253 polypeptide=Potri.008G119400.4.p locus=Potri.008G119400 ID=Potri.008G119400.4.v4.1 annot-version=v4.1 MVERLVIWSPAEMALVGYVSWEEVNVSSDKGRREVKYYLKKNDGGIDLAIIGKEKSLRHMSYYFAISIRSNFYSMTPPVKLKSRREVIDWLNSIVSGSLP HEPSIQAGSLDNSDASRLDMETFKDNQSQKLGHYYSEFLWLGSPWTCRKRKKHYESFCRNGVKISVHDFVYVLAEESKRLVAYLEDLYEDSKGNKMVMVR WFHKIDEVGIVLPHNFNDREIFFSRCLQDLSIECIDGLAIVLSPQHFKKFLNEAVRTRFNPFVCYKQFDNEEVTPFDITQVEGYWSQEILRYLTIPTSNY LANSQHPFSGSRGEGNDNDASRMRPKKMLRRSKDNDGVCTGSKELLTARYINMQSFHTSRVDGKTGYAFLSTAEVMQNPPQSLNVSSEVEVLSQDSGIRG CWFRASIIKKHKDKVKVRYQDISDAANEAQKLEEWVLVSRVAAPDQLAIRISGRTVVRPTPQFNKGQMASVADVGTAVDAWWNDAWWEGIVVHKETEDRI HVFFPGVKKESVFCCSDLRLSLEWLGNAWKHIKERPDILSHLSSCLERKQVTFISDESKLAEVAIPGSRQSGKANPECGDYPFESRLDMRKEVKALPDLS KDKLLAQLRWSSIKKRRRGSGSSGHKMHHNNNGGLRLSEVVGSNAGERFLIPTSLKVDHENCKYMGDSLFTCAVVQPLTGLVMSR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G68580			agenet domain-containing prote...		Potri.008G119400 [exp]	0	1
AT5G01270		CPL2, ATCPL2	carboxyl-terminal domain (ctd)...		Potri.016G114600 [exp]	1.41	0.7311
AT1G67500		ATREV3	recovery protein 3 (.1.2)		Potri.013G022200 [exp]	3.87	0.7599
AT4G38470		STY46	serine/threonine/tyrosine kina...		Potri.005G190200 [exp]	4.47	0.6693
AT5G15640			Mitochondrial substrate carrie...		Potri.004G117000 [exp]	7.48	0.6777
AT1G56460			HIT zinc finger ;PAPA-1-like c...		Potri.002G195132 [exp]	15.00	0.6634
AT2G26000		BRIZ2	BRAP2 RING ZnF UBP domain-cont...		Potri.007G063900 [exp]	18.97	0.6677
AT3G16730		HEB2	hypersensitive to excess boron...		Potri.008G219100 [exp]	20.61	0.6372
AT4G01270			RING/U-box superfamily protein...		Potri.002G164000 [exp]	23.74	0.7251
AT1G55350		EMB80, ATDEK1, ...	EMBRYO DEFECTIVE 80, embryo de...		Potri.003G221100 [exp]	25.21	0.7208
AT1G79350		EMB1135	embryo defective 1135, RING/FY...		Potri.010G174900 [exp]	29.69	0.6748

Compare expression of checked genes

Potri.008G119400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.