Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39670 307 / 1e-106 Glycolipid transfer protein (GLTP) family protein (.1) AT2G34690 202 / 1e-65 ACD11 ACCELERATED CELL DEATH 11, Glycolipid transfer protein (GLTP) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G051800 [exp] 228 / 9e-76 AT2G34690 305 / 9e-107 ACCELERATED CELL DEATH 11, Glycolipid transfer protein (GLTP) family protein (.1) Potri.016G055300 [exp] 221 / 1e-72 AT2G34690 295 / 1e-102 ACCELERATED CELL DEATH 11, Glycolipid transfer protein (GLTP) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035024 [exp] 322 / 1e-111 AT4G39670 305 / 4e-105 Glycolipid transfer protein (GLTP) family protein (.1) Lus10034305 [exp] 298 / 3e-96 AT1G68570 681 / 0.0 Major facilitator superfamily protein (.1) Lus10023267 [exp] 221 / 1e-72 AT2G34690 293 / 5e-102 ACCELERATED CELL DEATH 11, Glycolipid transfer protein (GLTP) family protein (.1) Lus10038537 [exp] 209 / 3e-66 AT2G34690 279 / 5e-94 ACCELERATED CELL DEATH 11, Glycolipid transfer protein (GLTP) family protein (.1) Lus10021685 [exp] 184 / 2e-58 AT4G39670 175 / 2e-55 Glycolipid transfer protein (GLTP) family protein (.1) Lus10041466 [exp] 143 / 7e-39 AT1G68570 850 / 0.0 Major facilitator superfamily protein (.1) Lus10003626 [exp] 52 / 1e-07 AT2G33470 242 / 3e-81 ARABIDOPSIS GLYCOLIPID TRANSFER PROTEIN 1, glycolipid transfer protein 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08718 [poplar] [flax] GLTP Glycolipid transfer protein (GLTP)
Representative CDS sequence Show only first row Show all	>Potri.008G119600.1 pacid=42806097 polypeptide=Potri.008G119600.1.p locus=Potri.008G119600 ID=Potri.008G119600.1.v4.1 annot-version=v4.1 ATGATGCCTCCTCCACCACGCTCTTCCACAACATTATACAGCCAACAACAACACGAAGCACAAGACGAATTTGTTGTTGAAGAGGAGGCTACGGAAGCCA ACATGACGACAACGACAACAACAAGAGCAAAAACACCCTTATCGGAGATTGTAGAGGCGTTTGAGGAGCTAGCAAAATCTCTGAATTCTCGGAGGATCAG AAATTCAGACAAAGGAGCTGGAGGAGAGCTTAGATTGGATGCGTTCTCTAAAACATGCTCTTTGGTCTCTGTTCTTTTCAGCTGCCTCGGTCTTGCCTTT CGATTCGCCGAGTCCGAGTACGTTGCCAAGGTGCGTGATCTTGTGGAAGCATCGAAGGAGTATAACACTTTACAAACTATACTCGATCTAGATGTTGCAA ATGGCACAGTAAGAACATCAGGCAGTCATTCACGTAATTTACGTCGAGTCAGGCAGGGTCTTGACCTTATCAGGGCTTTGTTTGAACAGTTTCTGTCTAC AAATGATTACTCTTTAAGAGAAGCAGCAACAACAGCTTATTCACAAGTTTGTGCACCATACCATACATGGGCTGTCAGGACAGCGGTTTATGCTGGCATG TATACTCTTCCAACTAGGGACCAACTTCTACTGAATCTCAATGAAACTGAACATTCAGCAGAGAAGAACATGAGAAGGTATATCAATGCTTCACTTCCAG TCATCGAGTATATTGATAGGCTTTACATTTCCAGGAATATCCGCTTGGACTGGTAA
AA sequence Show only first row Show all	>Potri.008G119600.1 pacid=42806097 polypeptide=Potri.008G119600.1.p locus=Potri.008G119600 ID=Potri.008G119600.1.v4.1 annot-version=v4.1 MMPPPPRSSTTLYSQQQHEAQDEFVVEEEATEANMTTTTTTRAKTPLSEIVEAFEELAKSLNSRRIRNSDKGAGGELRLDAFSKTCSLVSVLFSCLGLAF RFAESEYVAKVRDLVEASKEYNTLQTILDLDVANGTVRTSGSHSRNLRRVRQGLDLIRALFEQFLSTNDYSLREAATTAYSQVCAPYHTWAVRTAVYAGM YTLPTRDQLLLNLNETEHSAEKNMRRYINASLPVIEYIDRLYISRNIRLDW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G39670			Glycolipid transfer protein (G...		Potri.008G119600 [exp]	0	1
AT2G35980		NHL10, YLS9, AT...	YELLOW-LEAF-SPECIFIC GENE 9, A...		Potri.016G071600 [exp]	1.41	0.9548
AT4G33050		EDA39	embryo sac development arrest ...		Potri.018G061901 [exp]	5.29	0.9512
					Potri.013G045366 [exp]	6.32	0.9447
AT4G25800			Calmodulin-binding protein (.1...		Potri.013G010700 [exp]	7.93	0.9429
AT5G22380	NAC	ANAC090	NAC domain containing protein ...		Potri.016G076100 [exp]	10.58	0.9339
AT1G14870		AtPCR2, PCR2	PLANT CADMIUM RESISTANCE 2 (.1...		Potri.010G108800 [exp]	11.61	0.9403
					Potri.001G077160 [exp]	11.95	0.9377
AT3G22930		CML11	calmodulin-like 11 (.1)		Potri.005G215700 [exp]	15.23	0.9460
AT2G03550			alpha/beta-Hydrolases superfam...		Potri.009G104000 [exp]	17.88	0.9201
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Potri.004G091500 [exp]	20.49	0.9376

Compare expression of checked genes

Potri.008G119600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.