Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38470 382 / 1e-131 RAD23D RADIATION SENSITIVE23D, Rad23 UV excision repair protein family (.1.2) AT1G79650 306 / 4e-102 AtAO1, RAD23B, RAD23 RADIATION SENSITIVE23B, Arabidopsis thaliana aldehyde oxidase 1, Rad23 UV excision repair protein family (.1.2.3.4) AT3G02540 308 / 6e-102 RAD23C, RAD23-3 RADIATION SENSITIVE23C, PUTATIVE DNA REPAIR PROTEIN RAD23-3, Rad23 UV excision repair protein family (.1.2.3) AT1G16190 237 / 3e-75 RAD23A RADIATION SENSITIVE23A, Rad23 UV excision repair protein family (.1) AT5G16090 88 / 1e-20 unknown protein AT3G52590 54 / 7e-09 HAP4, ERD16, UBQ1, EMB2167 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1) AT2G36170 54 / 7e-09 Ubiquitin supergroup;Ribosomal protein L40e (.1) AT3G62250 54 / 9e-09 UBQ5 ubiquitin 5 (.1) AT2G47110 54 / 9e-09 UBQ6 ubiquitin 6 (.1.2) AT1G23410 54 / 1e-08 Ribosomal protein S27a / Ubiquitin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G126200 [exp] 357 / 2e-121 AT5G38470 367 / 1e-125 RADIATION SENSITIVE23D, Rad23 UV excision repair protein family (.1.2) Potri.017G114000 [exp] 327 / 7e-110 AT3G02540 369 / 9e-126 RADIATION SENSITIVE23C, PUTATIVE DNA REPAIR PROTEIN RAD23-3, Rad23 UV excision repair protein family (.1.2.3) Potri.004G100700 [exp] 314 / 7e-105 AT3G02540 476 / 8e-168 RADIATION SENSITIVE23C, PUTATIVE DNA REPAIR PROTEIN RAD23-3, Rad23 UV excision repair protein family (.1.2.3) Potri.001G038000 [exp] 244 / 6e-78 AT1G79650 456 / 6e-161 RADIATION SENSITIVE23B, Arabidopsis thaliana aldehyde oxidase 1, Rad23 UV excision repair protein family (.1.2.3.4) Potri.003G186600 [exp] 242 / 4e-77 AT1G79650 474 / 4e-168 RADIATION SENSITIVE23B, Arabidopsis thaliana aldehyde oxidase 1, Rad23 UV excision repair protein family (.1.2.3.4) Potri.016G077000 [exp] 55 / 1e-09 AT3G52590 194 / 1e-65 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1) Potri.015G007100 [exp] 54 / 6e-09 AT3G52590 260 / 2e-91 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1) Potri.012G024300 [exp] 54 / 6e-09 AT3G52590 260 / 2e-91 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1) Potri.016G077200 [exp] 54 / 6e-09 AT3G52590 260 / 2e-91 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034308 [exp] 292 / 2e-96 AT3G02540 491 / 7e-174 RADIATION SENSITIVE23C, PUTATIVE DNA REPAIR PROTEIN RAD23-3, Rad23 UV excision repair protein family (.1.2.3) Lus10026110 [exp] 289 / 4e-95 AT1G79650 519 / 0.0 RADIATION SENSITIVE23B, Arabidopsis thaliana aldehyde oxidase 1, Rad23 UV excision repair protein family (.1.2.3.4) Lus10034307 [exp] 288 / 8e-94 AT3G02540 493 / 1e-173 RADIATION SENSITIVE23C, PUTATIVE DNA REPAIR PROTEIN RAD23-3, Rad23 UV excision repair protein family (.1.2.3) Lus10041465 [exp] 286 / 9e-94 AT3G02540 494 / 4e-175 RADIATION SENSITIVE23C, PUTATIVE DNA REPAIR PROTEIN RAD23-3, Rad23 UV excision repair protein family (.1.2.3) Lus10041464 [exp] 194 / 4e-58 AT3G02540 411 / 6e-142 RADIATION SENSITIVE23C, PUTATIVE DNA REPAIR PROTEIN RAD23-3, Rad23 UV excision repair protein family (.1.2.3) Lus10008710 [exp] 148 / 9e-43 AT1G79650 248 / 2e-82 RADIATION SENSITIVE23B, Arabidopsis thaliana aldehyde oxidase 1, Rad23 UV excision repair protein family (.1.2.3.4) Lus10008873 [exp] 54 / 8e-09 AT3G52590 261 / 5e-92 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1) Lus10030894 [exp] 54 / 1e-08 AT2G47110 257 / 3e-89 ubiquitin 6 (.1.2) Lus10030595 [exp] 54 / 1e-08 AT2G47110 257 / 3e-89 ubiquitin 6 (.1.2) Lus10018367 [exp] 52 / 1e-07 AT4G05320 452 / 4e-164 polyubiquitin 10 (.1.2.3.4.5.6)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [poplar] [flax] Ubiquitin PF00240 [poplar] [flax] ubiquitin Ubiquitin family CL0214 [poplar] [flax] UBA PF00627 [poplar] [flax] UBA UBA/TS-N domain CL0214 [poplar] [flax] PF09280 [poplar] [flax] XPC-binding XPC-binding domain
Representative CDS sequence Show only first row Show all	>Potri.008G119700.3 pacid=42807370 polypeptide=Potri.008G119700.3.p locus=Potri.008G119700 ID=Potri.008G119700.3.v4.1 annot-version=v4.1 ATGAAGATTTTTGTTAAGACCCTGAAAGGCAGTACTTTTGACATCGAAGTTAAACCTGAAGACACGGTTGCTGATGTCAAAAAGAAAATAGAAACAGCTC AAGGGGTAGCCGTTTATCCTGCTGAGCAGCAAATGCTTATTCACCAGGCGAAAGTTCTTAAAGATAACACCACTTTGGATGAAAATAAAATTGTTGAAAA TAGTTTTGTTGTTATCATGTTATCGAAGACTAAGAGCTCATCCGGTGATGGTTCAACTGCACCAACTGCCCCTACCACTAAGGCACCTACAACAAGTACC CCGGCATCAACAACAGCACCTCAAGCTCCCACATTGACCTCTGCACCGCCAGCATCTGCTCCTGCTCCTGCTCTGGTTTCTTCAGTTGCTGCTGCGTCAG ACTATGTTTATGGCCAAGCGGCATCTAGTCTGGTTGCTGGAAGTAACTTGGAGGTAGCAGTCCAGCAAATTCTTGACATGGGTGGAGGGACTTGGGATAG AGATACTGTTGTTCGTGCTCTTCGGGCTGCTTACAATAATCCAGAGAGAGCCATTGAATATTTATATTCTGGTATCCCAGAACAAGCAGAAGCTCCACCA GTGGCTCACATGCCTTTAGGTGGGCAAGCTCCTGCAGCCCAGCCCCAGCAGCATCCAACACAAACTGCTGCAGTTCCTTCTGGTGGACCAAATGCGAATC CTTTAGATCTTTTCCCACAGGGCCTTCCCAACGTGGGTTCAGGTGCTGGTGGAGCAGGAACTCTTGATTTTTTGCGGAACAGTCAACAGTTCCAAGCCTT GCGAGCTATGGTGCAGGCTAACCCGCAGATACTGCAGCCTATGCTTCAAGAGCTGGGAAAACAAAATCCTCACTTAATGAGGCTTATTCAAGAGCACCAA GATGATTTTCTCCGCTTGATCAATGAACCTGTTGAAAGTGGAGAGGGGAATGTGTTGGGGCAGCTTGCTGCAGCAATGCCACAAGCTGTAACAGTCACTC CTGAGGAGCGCGAGGCAATAGAACGTGTAAATTCTGCATCATTTTTACACTTGAAGCTATGGGTTTTGATCGTGCACTTGTATTGGAGGTATTCTTTGCC TGCAACAAGAACGAGGAGCTGGCTGCCAACTACCTCTTAG
AA sequence Show only first row Show all	>Potri.008G119700.3 pacid=42807370 polypeptide=Potri.008G119700.3.p locus=Potri.008G119700 ID=Potri.008G119700.3.v4.1 annot-version=v4.1 MKIFVKTLKGSTFDIEVKPEDTVADVKKKIETAQGVAVYPAEQQMLIHQAKVLKDNTTLDENKIVENSFVVIMLSKTKSSSGDGSTAPTAPTTKAPTTST PASTTAPQAPTLTSAPPASAPAPALVSSVAAASDYVYGQAASSLVAGSNLEVAVQQILDMGGGTWDRDTVVRALRAAYNNPERAIEYLYSGIPEQAEAPP VAHMPLGGQAPAAQPQQHPTQTAAVPSGGPNANPLDLFPQGLPNVGSGAGGAGTLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIQEHQ DDFLRLINEPVESGEGNVLGQLAAAMPQAVTVTPEEREAIERVNSASFLHLKLWVLIVHLYWRYSLPATRTRSWLPTTS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G38470		RAD23D	RADIATION SENSITIVE23D, Rad23 ...		Potri.008G119700 [exp]	0	1
AT5G35330		MBD2, MBD02, AT...	METHYL-CPG-BINDING DOMAIN PROT...		Potri.018G145500 [exp]	2.00	0.7758
AT5G54520			Transducin/WD40 repeat-like su...		Potri.001G410500 [exp]	4.24	0.7607
AT5G13750		ZIFL1	zinc induced facilitator-like ...		Potri.006G026200 [exp]	6.48	0.7334
AT5G35330		MBD2, MBD02, AT...	METHYL-CPG-BINDING DOMAIN PROT...		Potri.018G146700 [exp]	8.83	0.7020
					Potri.001G422900 [exp]	8.94	0.7460
AT5G62000	ARF	ORE14, HSS, ARF...	ORESARA 14, HLS1 SUPPRESSOR, A...		Potri.003G163600 [exp]	9.79	0.7595
AT4G27290			S-locus lectin protein kinase ...		Potri.011G125200 [exp]	14.83	0.6913
AT3G53960			Major facilitator superfamily ...		Potri.008G061100 [exp]	15.00	0.7145
AT3G04790		EMB3119	EMBRYO DEFECTIVE 3119, Ribose ...		Potri.006G039700 [exp]	18.49	0.6656
AT4G18240		ATSS4, SSIV	ARABIDOPSIS THALIANA STARCH SY...		Potri.018G149500 [exp]	21.54	0.6959

Compare expression of checked genes

Potri.008G119700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.