Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	XYL1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68560 1464 / 0 AXY3, TRG1, XYL1, ATXYL1 thermoinhibition resistant germination 1, altered xyloglucan 3, alpha-xylosidase 1 (.1) AT3G45940 1238 / 0 Glycosyl hydrolases family 31 protein (.1) AT5G11720 822 / 0 Glycosyl hydrolases family 31 protein (.1) AT5G63840 288 / 3e-83 PSL5, RSW3 RADIAL SWELLING 3, PRIORITY IN SWEET LIFE 5, Glycosyl hydrolases family 31 protein (.1) AT3G23640 288 / 6e-83 HGL1 heteroglycan glucosidase 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G125800 [exp] 1727 / 0 AT1G68560 1422 / 0.0 thermoinhibition resistant germination 1, altered xyloglucan 3, alpha-xylosidase 1 (.1) Potri.011G154500 [exp] 828 / 0 AT5G11720 1215 / 0.0 Glycosyl hydrolases family 31 protein (.1) Potri.011G154300 [exp] 827 / 0 AT5G11720 1194 / 0.0 Glycosyl hydrolases family 31 protein (.1) Potri.011G154200 [exp] 803 / 0 AT5G11720 1189 / 0.0 Glycosyl hydrolases family 31 protein (.1) Potri.001G442800 [exp] 799 / 0 AT5G11720 1167 / 0.0 Glycosyl hydrolases family 31 protein (.1) Potri.007G100000 [exp] 274 / 3e-78 AT5G63840 1427 / 0.0 RADIAL SWELLING 3, PRIORITY IN SWEET LIFE 5, Glycosyl hydrolases family 31 protein (.1) Potri.001G129600 [exp] 270 / 5e-76 AT3G23640 1463 / 0.0 heteroglycan glucosidase 1 (.1.2) Potri.005G069000 [exp] 260 / 2e-73 AT5G63840 1405 / 0.0 RADIAL SWELLING 3, PRIORITY IN SWEET LIFE 5, Glycosyl hydrolases family 31 protein (.1) Potri.006G039500 [exp] 80 / 6e-15 AT5G63840 74 / 3e-13 RADIAL SWELLING 3, PRIORITY IN SWEET LIFE 5, Glycosyl hydrolases family 31 protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034315 [exp] 1526 / 0 AT1G68560 1454 / 0.0 thermoinhibition resistant germination 1, altered xyloglucan 3, alpha-xylosidase 1 (.1) Lus10041457 [exp] 1500 / 0 AT1G68560 1455 / 0.0 thermoinhibition resistant germination 1, altered xyloglucan 3, alpha-xylosidase 1 (.1) Lus10035020 [exp] 1311 / 0 AT1G68560 1238 / 0.0 thermoinhibition resistant germination 1, altered xyloglucan 3, alpha-xylosidase 1 (.1) Lus10035019 [exp] 1269 / 0 AT1G68560 1195 / 0.0 thermoinhibition resistant germination 1, altered xyloglucan 3, alpha-xylosidase 1 (.1) Lus10038408 [exp] 813 / 0 AT5G11720 1150 / 0.0 Glycosyl hydrolases family 31 protein (.1) Lus10008067 [exp] 769 / 0 AT5G11720 1072 / 0.0 Glycosyl hydrolases family 31 protein (.1) Lus10000779 [exp] 330 / 6e-105 AT5G11720 473 / 1e-160 Glycosyl hydrolases family 31 protein (.1) Lus10021679 [exp] 308 / 3e-97 AT1G68560 286 / 1e-89 thermoinhibition resistant germination 1, altered xyloglucan 3, alpha-xylosidase 1 (.1) Lus10033490 [exp] 261 / 2e-73 AT5G63840 1444 / 0.0 RADIAL SWELLING 3, PRIORITY IN SWEET LIFE 5, Glycosyl hydrolases family 31 protein (.1) Lus10020887 [exp] 254 / 3e-71 AT5G63840 1435 / 0.0 RADIAL SWELLING 3, PRIORITY IN SWEET LIFE 5, Glycosyl hydrolases family 31 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF01055 [poplar] [flax] Glyco_hydro_31 Glycosyl hydrolases family 31 CL0103 [poplar] [flax] Gal_mutarotase PF16863 [poplar] [flax] NtCtMGAM_N N-terminal barrel of NtMGAM and CtMGAM, maltase-glucoamylase
Representative CDS sequence Show only first row Show all	>Potri.008G120000.1 pacid=42808689 polypeptide=Potri.008G120000.1.p locus=Potri.008G120000 ID=Potri.008G120000.1.v4.1 annot-version=v4.1 ATGTTTTCCTCTACTGGTTCTTTTTTTTCTCTGTTCTTCTTTAGTTTTCTTCTTGTTTTGCTCCTATCTTTCTATCAAGTAAACTCGTCTTCTACACCCA CCAAAATTGGCAAAGGCTACCGTCTCATTTCCATCGAAGAGACCCCTGATGGAGGCATTGTAGGCATCCTCCAAGTCAAGCAAAATAACAAAATCTACGG TCCTGATATCCCCCTCTTGCAGCTCTATGTCAAGCATGAAACACAGGATCGTTTAAGGGTCCATATTACTGATGCAGAGAAGCAGAGATGGGAAGTGCCA TACAATCTGTTACCAAGAGAGAAAGCACAAGCATTGAAGCAAACAATAGGGAGATCAAGAAAGAACCCAATAACTGTTCAGGAATACTCAGGCTCTGAGC TAATTTTTAGCTACATAGCAGACCCTTTTAGTTTTGCAGTGAAGAGAAAATCAAATGGGCAGACCCTTTTCAATTCAAGCTCTGACGGTTCAGGGTCATT TGGTGAAATGGTGTTTAAAGATCAGTACTTGGAGATATCAACACAGTTGCCTAAAGATGCTTCATTGTACGGTCTTGGAGAGAACACACAGCCGCATGGT ATTAAGCTGTACCCTGGAGTTCCATACACCTTGTATACAACTGATATCTCCGCCATTAATCTTAATGCTGATCTATATGGGTCCCATCCGGTATACATGG ATCTCAGGAAGGTGAAGGGCCAAGCTTATGCTCATGCTGTTCTGTTGTTGAACAGCAATGGCATGGATGTGTTCTATAGAGGGACTTCTTTGACATACAA GATTATTGGGGGTGTTTTTGACTTCTACTTCTTTTCTGGACCCAGTCCTCTTGCTGTTGTTGATCAGTACACCGCTTTAATTGGAAGACCAGCTCCAATG CCTTACTGGGCTTTTGGTTTCCACCAATGCAGATGGGGTTACCATAACCTGTCTGTGGTTGAAGATGTTGTCGAGAACTACAAAAAGGCTCAGATCCCAC TTGATGTCATTTGGAATGATGACGATCACATGGATGGCCACAAGGACTTCACCCTCAACCTTGTCAACTATCCTCGTCCAAAACTTTTGGCTTTCCTAGA GAAGATACACAGCATTGGCATGAAGTATATTGTAATTATTGATCCTGGAATTGGTGTTAATTCTAGTTACGGTGTGTACCAAAGAGGCATTGCCAATGAT GTATTTATCAAGTATGAGGGTGAGCCCTACTTAGCTCAAGTTTGGCCAGGAGCTGTCAACTTTCCTGACTTTCTCAATCCAAAAACAGTAGACTGGTGGG GTGATGAAGTTCGTCGGTTCCATGAACTTGTCCCTGTTGATGGTCTTTGGATTGACATGAATGAAGCTTCAAATTTTTGTTCTGGACTGTGCAAAATCCC AAAGGGCAAGCAGTGTCCAAGTGGAACTGGACCTGGTTGGGTCTGCTGCTTGGATTGCAAAAACATAACAAAAACAAGATGGGATGATCCACCTTACAAG ATAAATGCTTCAGGATTGCAGGTTCCAATAGGGTACAAAACCATAGCAACCAGTGCTGTTCACTACAATGGTGTTTTGGAGTATGATGCTCATAGCCTCT ATGGATTCTCTCAGGCCATTGCTACTCACAAGGCCCTGCAAGGTCTTGAAGGCAAGAGGCCATTTATATTATCACGCTCCACTTATGTTGGATCAGGCAA ATATGCTGCTCACTGGACCGGTGATAATAAAGGCACTTGGGAGGATTTGAAATATTCCATTTCTACTATGATAAATTTTGGTATTTTTGGGGTACCAATG GTTGGTTCAGATATATGTGGGTTTTATCCTGCACCCACTGAAGAGCTTTGCAACAGGTGGATTGAGGTGGGCGCTTTCTATCCCTTCTCAAGGGATCATG CGAACTTCTATTCCCCAAGGCAGGAGCTTTATCAATGGGATTCAGTAGCTGAGTCTGCTAGAAATGCACTTGGTATGAGGTACAAGATTCTTCCATATCT CTACACACTGAGCTATGAGGCTCATACGACAGGAGCCCCAATTGCTAGACCACTTTTCTTCTCCTTCCCAGATTACACTGAGTGTTACGGGTTGAGCACC CAGTTCTTGCTCGGAAGTAGCCTCATGATATCTCCGGTGCTTGAGCAAGGGAAATCACAGGTTAAAGCACTCTTTCCTCCTGGTAGTTGGTACAACTTAT TCGATATGACACAGGCCATTACATCGGAAGGAGGGCAGTATGTCACTCTTGATGCACCCTTGCATGTTGTTAATGTGCATTTGCATCAGAACACAATCCT ACCCATGCAGCAGGGTGGAATGATCTCTAAGGAAGCCAGAATGACACCTTTTGCCCTTGTAGTGACCTTCCCTGCAGGGGCTAGTGATGGAAAAGCTGCT GGGAAACTTTTCCTTGATGACGACGAGCTCCCGGAAATGAAACTGGCAAGCGGATCGGCAACATATGTCGATTTCTATGCAACCTTAAGTCAAGGAACTG TGAAATTGTGGTCAGAAGTTCAGGAAAGCAAGTTTGCTTTAGATAAGGGTTGGAAAATCAGTAAGGTAGCAGTGTTGGGATTAGGTAGAAGCGGGGCACC ATCAGCACTGGAGTTTGATGGGAAGCCGGTAACCGCTGCTTCAAACATCGAGTTGACCTCATTGGAGCAGAAATATCTTGAGGACCTCCAAGTTGGCAGT GAAAAGAAGAGTAGTGTGATGGTAGAAGTTAATGGCTTGGAAATTCCTGTTGGCAAAAACTTTGCCATGTCCTGGAAAATGGGGATCAGCGGTTGA
AA sequence Show only first row Show all	>Potri.008G120000.1 pacid=42808689 polypeptide=Potri.008G120000.1.p locus=Potri.008G120000 ID=Potri.008G120000.1.v4.1 annot-version=v4.1 MFSSTGSFFSLFFFSFLLVLLLSFYQVNSSSTPTKIGKGYRLISIEETPDGGIVGILQVKQNNKIYGPDIPLLQLYVKHETQDRLRVHITDAEKQRWEVP YNLLPREKAQALKQTIGRSRKNPITVQEYSGSELIFSYIADPFSFAVKRKSNGQTLFNSSSDGSGSFGEMVFKDQYLEISTQLPKDASLYGLGENTQPHG IKLYPGVPYTLYTTDISAINLNADLYGSHPVYMDLRKVKGQAYAHAVLLLNSNGMDVFYRGTSLTYKIIGGVFDFYFFSGPSPLAVVDQYTALIGRPAPM PYWAFGFHQCRWGYHNLSVVEDVVENYKKAQIPLDVIWNDDDHMDGHKDFTLNLVNYPRPKLLAFLEKIHSIGMKYIVIIDPGIGVNSSYGVYQRGIAND VFIKYEGEPYLAQVWPGAVNFPDFLNPKTVDWWGDEVRRFHELVPVDGLWIDMNEASNFCSGLCKIPKGKQCPSGTGPGWVCCLDCKNITKTRWDDPPYK INASGLQVPIGYKTIATSAVHYNGVLEYDAHSLYGFSQAIATHKALQGLEGKRPFILSRSTYVGSGKYAAHWTGDNKGTWEDLKYSISTMINFGIFGVPM VGSDICGFYPAPTEELCNRWIEVGAFYPFSRDHANFYSPRQELYQWDSVAESARNALGMRYKILPYLYTLSYEAHTTGAPIARPLFFSFPDYTECYGLST QFLLGSSLMISPVLEQGKSQVKALFPPGSWYNLFDMTQAITSEGGQYVTLDAPLHVVNVHLHQNTILPMQQGGMISKEARMTPFALVVTFPAGASDGKAA GKLFLDDDELPEMKLASGSATYVDFYATLSQGTVKLWSEVQESKFALDKGWKISKVAVLGLGRSGAPSALEFDGKPVTAASNIELTSLEQKYLEDLQVGS EKKSSVMVEVNGLEIPVGKNFAMSWKMGISG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G68560		AXY3, TRG1, XYL...	thermoinhibition resistant ger...		Potri.008G120000 [exp]	0	1	XYL1.2
AT3G24480			Leucine-rich repeat (LRR) fami...		Potri.006G245600 [exp]	7.34	0.9547
AT3G20820			Leucine-rich repeat (LRR) fami...		Potri.003G207000 [exp]	7.48	0.8961	Pt-PGI.2
AT3G25110		ATFATA	fatA acyl-ACP thioesterase (.1...		Potri.002G245600 [exp]	7.81	0.8933
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Potri.010G000600 [exp]	10.09	0.8691	Pt-BETV1.1
AT3G08030			Protein of unknown function, D...		Potri.001G263900 [exp]	11.13	0.8926
					Potri.008G104900 [exp]	11.57	0.9443
AT1G09390			GDSL-like Lipase/Acylhydrolase...		Potri.005G006500 [exp]	15.77	0.8812
AT5G05730		JDL1, WEI2, TRP...	WEAK ETHYLENE INSENSITIVE 2, T...		Potri.010G190600 [exp]	16.79	0.8470
AT5G18020			SAUR-like auxin-responsive pro...		Potri.009G126400 [exp]	17.32	0.9248
AT1G72190			D-isomer specific 2-hydroxyaci...		Potri.013G104200 [exp]	17.74	0.8671

Compare expression of checked genes

Potri.008G120000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.