Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68540 505 / 0 TKPR2, CCRL6 tetraketide alpha-pyrone reductase 2, cinnamoyl coA reductase-like 6, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G25460 437 / 3e-155 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G35420 308 / 2e-104 TKPR1, DRL1 tetraketide alpha-pyrone reductase 1, dihydroflavonol 4-reductase-like1 (.1) AT5G19440 270 / 3e-89 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G51410 269 / 4e-89 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09510 259 / 2e-85 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09490 238 / 5e-77 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G09480 239 / 1e-76 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09500 229 / 2e-73 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT1G66800 228 / 6e-73 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G125400 [exp] 545 / 0 AT1G68540 428 / 1e-151 tetraketide alpha-pyrone reductase 2, cinnamoyl coA reductase-like 6, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.008G138600 [exp] 287 / 5e-96 AT4G35420 535 / 0.0 tetraketide alpha-pyrone reductase 1, dihydroflavonol 4-reductase-like1 (.1) Potri.009G057800 [exp] 268 / 1e-88 AT5G19440 435 / 5e-154 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G256400 [exp] 266 / 6e-88 AT5G19440 552 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G057500 [exp] 265 / 2e-87 AT5G19440 444 / 1e-157 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G052000 [exp] 265 / 3e-87 AT1G51410 563 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G057600 [exp] 260 / 2e-85 AT5G19440 474 / 7e-170 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G045000 [exp] 242 / 2e-78 AT1G15950 484 / 3e-173 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.001G046400 [exp] 241 / 5e-78 AT1G15950 510 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035016 [exp] 519 / 0 AT1G68540 468 / 2e-167 tetraketide alpha-pyrone reductase 2, cinnamoyl coA reductase-like 6, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10006141 [exp] 278 / 3e-92 AT4G35420 484 / 2e-173 tetraketide alpha-pyrone reductase 1, dihydroflavonol 4-reductase-like1 (.1) Lus10009955 [exp] 276 / 7e-92 AT1G51410 548 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10026070 [exp] 270 / 3e-89 AT5G19440 419 / 4e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10014363 [exp] 269 / 8e-89 AT5G19440 420 / 3e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10002302 [exp] 266 / 7e-88 AT5G19440 413 / 2e-145 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10002300 [exp] 265 / 2e-87 AT5G19440 423 / 2e-149 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10039595 [exp] 263 / 2e-86 AT5G19440 462 / 6e-165 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10008668 [exp] 263 / 2e-86 AT5G19440 388 / 9e-136 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10024130 [exp] 256 / 4e-78 AT5G09860 933 / 0.0 nuclear matrix protein-related (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF01370 [poplar] [flax] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Potri.008G120200.1 pacid=42808538 polypeptide=Potri.008G120200.1.p locus=Potri.008G120200 ID=Potri.008G120200.1.v4.1 annot-version=v4.1 ATGCCGGAATATTGTGTAACAGGTGGAACAGGGTTCATAGCGGCCTATTTGGTCAAATCCTTGCTTGAGAAAGGCCATCGTGTACGGACCACGGTACGAG ACCCAGGCGATGTTGGAAAGGTTGGTTTACTTCGGGAGTTTGATGGAGCCAAGGAGAGACTGAAGATTTTCAAAGCTGATTTGTTGGAAGAAGGCAGCTT TGATGAGGCTATACAAGGTGTTGATGGGGTGTTTCATACCGCATCACCGGTGCTTCTTCCTCACGACGATAATATCCAGGCAATGTTGATAGATCCATGT ATCAATGGCACCTTGAATGTGCTGAACTCCTGTTCGAAGGCTAATACCGTGAAACGAGTTGTCCTCACCTCTTCCTGCTCTTCAATAAGATACCGTGACG ACGTCCAACAAGTTTCTCCTCTCAACGAATCGCATTGGAGCGATCCCGAATATTGCAAACGCTACGATCTTTGGTATGCATATGCAAAAACTATAGGGGA GAAAGAGGCTTGGAGATCAGCGAAGGAAAATGGCATTGATCTTGTGGTGGTTAATCCCTCCTTTGTAGTTGGTCCGCTGCTTGCACCACAACCAACCAGC ACGTTGCTCTTGATACTGGCCATTGTTAAAGGTCTGCGAGGAGAATATCCAAACATGACAATCGGATTTGTGCACATAGATGATGTGGTTGCTGCTCACA TTTTAGCAATGGAGGATAAGAAAGCATCAGGCAGGCTCGTATGTTCAGGCTCAGTAGCTCACTGGTCAGAGATCATTGAGATGCTCAGGGCCAAATATCC ATCCTATCCATATGAAAACAAGTGTAGCAGCCAGAAAGGAGACTGCAATCCGCATAGCATGGACACCACCAAGATTGCCACGTTGGGGTTCCCTCCTTTC AAAACACTGGAAGAAATGTTTGATGACTGCATCAAGAGTTTCCAGGAGAAGGGATTCCTGTAA
AA sequence Show only first row Show all	>Potri.008G120200.1 pacid=42808538 polypeptide=Potri.008G120200.1.p locus=Potri.008G120200 ID=Potri.008G120200.1.v4.1 annot-version=v4.1 MPEYCVTGGTGFIAAYLVKSLLEKGHRVRTTVRDPGDVGKVGLLREFDGAKERLKIFKADLLEEGSFDEAIQGVDGVFHTASPVLLPHDDNIQAMLIDPC INGTLNVLNSCSKANTVKRVVLTSSCSSIRYRDDVQQVSPLNESHWSDPEYCKRYDLWYAYAKTIGEKEAWRSAKENGIDLVVVNPSFVVGPLLAPQPTS TLLLILAIVKGLRGEYPNMTIGFVHIDDVVAAHILAMEDKKASGRLVCSGSVAHWSEIIEMLRAKYPSYPYENKCSSQKGDCNPHSMDTTKIATLGFPPF KTLEEMFDDCIKSFQEKGFL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G68540		TKPR2, CCRL6	tetraketide alpha-pyrone reduc...		Potri.008G120200 [exp]	0	1
AT2G24580			FAD-dependent oxidoreductase f...		Potri.006G272800 [exp]	2.23	0.9237
AT1G69310	WRKY	ATWRKY57, WRKY5...	WRKY DNA-binding protein 57 (....		Potri.008G094000 [exp]	9.79	0.9015
AT1G68590			Ribosomal protein PSRP-3/Ycf65...		Potri.004G101000 [exp]	13.85	0.9083
AT5G06490			RING/U-box superfamily protein...		Potri.008G019000 [exp]	14.83	0.8963
AT5G53160		RCAR3, PYL8	PYR1-like 8, regulatory compon...		Potri.015G020500 [exp]	15.49	0.8937
AT2G36690			2-oxoglutarate (2OG) and Fe(II...		Potri.008G029700 [exp]	20.66	0.9010
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Potri.010G073166 [exp]	25.61	0.9057
					Potri.009G016950 [exp]	39.82	0.8526
AT3G21760		HYR1	HYPOSTATIN RESISTANCE 1, UDP-G...		Potri.006G007600 [exp]	40.63	0.8518
AT4G13510		ATAMT1;1, AMT1;...	ARABIDOPSIS THALIANA AMMONIUM ...		Potri.002G255000 [exp]	40.98	0.8777	Pt-AMT1.3,5

Compare expression of checked genes

Potri.008G120200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.