Plant FIBer expression Database

Potri.008G120800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G25905 56 / 2e-11 CLE27 CLAVATA3/ESR-RELATED 27 (.1)
AT1G25425 47 / 6e-08 CLE43 CLAVATA3/ESR-RELATED 43 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G124900
[exp]
155 / 1e-50 AT1G25425 43 / 2e-06 CLAVATA3/ESR-RELATED 43 (.1)
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.008G120800.1 pacid=42805833 polypeptide=Potri.008G120800.1.p locus=Potri.008G120800 ID=Potri.008G120800.1.v4.1 annot-version=v4.1
ATGTCGTTTGGCAGCTCTAGGAGAATCATGTACTCTACATCTCTGGTGGTGGTCTTGGTCATGTTTGTGTTACAGATTTGGGTCTGCGGTGTCTCCAACT
GTAAGGCAGGAGCAATAAGGTTACTTCAAGAGAATGACATGGCAAAGTTTAAAGAGAGCGGCAATAATATTCCTGCAAATAATTACAAGAGCAAAGAAGA
ATACTTCAGGAAGTACTTCAATGAAAGAGGTAACACTTCTCATGGTTTCAACAAAACTGAGAAAGGATTTGAAGAGAGCAAAAGAAGAGTGCCCAGTTGT
CCAGATCCTCTCCATAACTAG
AA sequence
>Potri.008G120800.1 pacid=42805833 polypeptide=Potri.008G120800.1.p locus=Potri.008G120800 ID=Potri.008G120800.1.v4.1 annot-version=v4.1
MSFGSSRRIMYSTSLVVVLVMFVLQIWVCGVSNCKAGAIRLLQENDMAKFKESGNNIPANNYKSKEEYFRKYFNERGNTSHGFNKTEKGFEESKRRVPSC
PDPLHN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G25905 CLE27 CLAVATA3/ESR-RELATED 27 (.1) Potri.008G120800
[exp]
0 1
AT1G29660 GDSL-like Lipase/Acylhydrolase... Potri.018G089200
[exp]
2.44 0.9493
AT3G10910 RING/U-box superfamily protein... Potri.013G157000
[exp]
9.05 0.9458
AT1G29670 GDSL-like Lipase/Acylhydrolase... Potri.018G089300
[exp]
9.16 0.9370
AT5G45670 GDSL-like Lipase/Acylhydrolase... Potri.018G088600
[exp]
12.48 0.9283
AT2G29110 ATGLR2.8 glutamate receptor 2.8 (.1) Potri.018G012800
[exp]
13.41 0.9057
AT1G45616 AtRLP6 receptor like protein 6 (.1) Potri.012G007932
[exp]
20.44 0.9118
Potri.002G169350
[exp]
20.49 0.8692
AT2G25440 AtRLP20 receptor like protein 20 (.1) Potri.012G007800
[exp]
31.43 0.9051
AT1G76080 ATCDSP32, CDSP3... ARABIDOPSIS THALIANA CHLOROPLA... Potri.002G016401
[exp]
42.89 0.9159
AT3G22690 unknown protein Potri.013G044700
[exp]
50.46 0.9132

Potri.008G120800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.