Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25920 310 / 1e-106 RPL15 ribosomal protein L15 (.1) AT5G64670 59 / 5e-10 Ribosomal protein L18e/L15 superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G124301 [exp] 326 / 8e-113 AT3G25920 257 / 1e-85 ribosomal protein L15 (.1) Potri.016G002400 [exp] 57 / 3e-09 AT5G64670 315 / 1e-108 Ribosomal protein L18e/L15 superfamily protein (.1) Potri.001G324300 [exp] 52 / 7e-08 AT5G64670 323 / 1e-111 Ribosomal protein L18e/L15 superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010916 [exp] 327 / 2e-113 AT3G25920 321 / 4e-111 ribosomal protein L15 (.1) Lus10031417 [exp] 255 / 1e-86 AT3G25920 246 / 3e-83 ribosomal protein L15 (.1) Lus10032390 [exp] 51 / 2e-07 AT5G64670 385 / 9e-136 Ribosomal protein L18e/L15 superfamily protein (.1) Lus10023078 [exp] 47 / 5e-06 AT5G64670 369 / 3e-129 Ribosomal protein L18e/L15 superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0588 [poplar] [flax] Ribos_L15p_L18e PF00828 [poplar] [flax] Ribosomal_L27A Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
Representative CDS sequence Show only first row Show all	>Potri.008G121100.1 pacid=42806206 polypeptide=Potri.008G121100.1.p locus=Potri.008G121100 ID=Potri.008G121100.1.v4.1 annot-version=v4.1 ATGGCAATGGCAATGGCAATGGCAGCAGCGTCTCTTCCTTGCCCTTCTTCTCCATTCAAGGGAAACTTGACGAGATTGAAGCCAAAGACATGCAACTTCA CTTGTCTTACACTCCATTCTAAGAACAAAAGACCATCGGTGGTAGTCAATCAAGCAGCAGCACCTTCTGTGGTTACTACATCTTCAGGAGCGAGGCTCAG GCTGGACAATCTGGGCCCACAACCAGGGTCTAGAAAGAAAGGGAAGAGAAAGGGAAGAGGTATCTCTGCAGGACAAGGGAACAGTTGTGGGTTTGGTATG AGAGGTCAGAAATCTCGGTCTGGTCCTGGTGTTCGAAAAGGGTTCGAGGGTGGACAAATGCCTCTTTACCGCCGTATCCCTAAATTGCGTGGAATTGCTG GAGGTATGCATGCGGGTTTGCCAAAATATGTCCCTGTGAACTTGAAAGACATAGCATCAGCAGGATTCCAAGAGGGAGCGGAGGTATCACTAGAGACTTT GAAGGAGAAAGGCTTGATCAACCCATCAGGAAGAGAAAGGAGACTCCCTTTGAAGGTTCTGGGTGATGGAGAACTAAGTGTCAAGCTGAACATTAAAGCT CGTGCCTTTTCAGCAGCAGCCAAGGAGAAGCTTGAGGCTGCCGGATGCTCTCTTACTGTATTACCTGGCCGAAAGAAGTGGGTGAAACCATCAGTTGCTA AGAACCTTGCTCGTGCTGAAGAATACTTTGCTAAGAAACGAGCTGCAGCCATTGTGTCTGAACCGTCCTCGGCTTAA
AA sequence Show only first row Show all	>Potri.008G121100.1 pacid=42806206 polypeptide=Potri.008G121100.1.p locus=Potri.008G121100 ID=Potri.008G121100.1.v4.1 annot-version=v4.1 MAMAMAMAAASLPCPSSPFKGNLTRLKPKTCNFTCLTLHSKNKRPSVVVNQAAAPSVVTTSSGARLRLDNLGPQPGSRKKGKRKGRGISAGQGNSCGFGM RGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIASAGFQEGAEVSLETLKEKGLINPSGRERRLPLKVLGDGELSVKLNIKA RAFSAAAKEKLEAAGCSLTVLPGRKKWVKPSVAKNLARAEEYFAKKRAAAIVSEPSSA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G25920		RPL15	ribosomal protein L15 (.1)		Potri.008G121100 [exp]	0	1
AT4G30845			unknown protein		Potri.006G180200 [exp]	1.00	0.9879
AT4G15510			Photosystem II reaction center...		Potri.005G010700 [exp]	1.41	0.9852
AT3G47070			unknown protein		Potri.009G043600 [exp]	2.44	0.9817
AT2G36885			unknown protein		Potri.016G098900 [exp]	3.16	0.9692
AT2G06520		PSBX	photosystem II subunit X (.1)		Potri.006G222300 [exp]	4.89	0.9782
AT4G25080		CHLM	magnesium-protoporphyrin IX me...		Potri.012G106600 [exp]	5.47	0.9737
AT2G38140		PSRP4	plastid-specific ribosomal pro...		Potri.016G113700 [exp]	6.32	0.9711	Pt-PSRP4.1
AT3G14930		HEME1	Uroporphyrinogen decarboxylase...		Potri.001G390800 [exp]	7.00	0.9712
AT4G01310			Ribosomal L5P family protein (...		Potri.002G154600 [exp]	9.16	0.9729
AT4G14890		FdC2	ferredoxin C 2, 2Fe-2S ferredo...		Potri.008G153200 [exp]	9.16	0.9582

Compare expression of checked genes

Potri.008G121100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.