Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68480 112 / 2e-29 C2H2ZnF JAG JAGGED, C2H2 and C2HC zinc fingers superfamily protein (.1) AT1G13400 89 / 5e-21 C2H2ZnF JGL, NUB NUBBIN, JAGGED-LIKE, C2H2 and C2HC zinc fingers superfamily protein (.1) AT5G05120 52 / 4e-08 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT5G27880 47 / 7e-06 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT1G67030 44 / 2e-05 C2H2ZnF ZFP6 zinc finger protein 6 (.1) AT5G43540 44 / 2e-05 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT5G01860 43 / 6e-05 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT5G57520 42 / 0.0001 C2H2ZnF ATZFP2, ZFP2 zinc finger protein 2 (.1) AT1G68360 42 / 0.0002 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT4G17810 42 / 0.0002 C2H2ZnF ZFP12 C2H2 and C2HC zinc fingers superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G124200 [exp] 363 / 1e-127 AT1G68480 120 / 7e-33 JAGGED, C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.014G178200 [exp] 47 / 3e-06 AT5G48890 61 / 1e-11 LATE FLOWERING, C2H2-like zinc finger protein (.1) Potri.002G041600 [exp] 46 / 6e-06 AT4G17810 65 / 6e-13 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.006G063800 [exp] 47 / 7e-06 AT5G01860 92 / 6e-22 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.008G123100 [exp] 46 / 7e-06 AT1G68360 123 / 4e-34 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.018G123800 [exp] 46 / 9e-06 AT5G25160 92 / 4e-22 zinc finger protein 3 (.1) Potri.005G221500 [exp] 45 / 1e-05 AT5G43540 61 / 6e-12 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.010G074400 [exp] 45 / 1e-05 AT5G43540 69 / 3e-15 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.009G093300 [exp] 45 / 1e-05 AT1G24625 89 / 6e-22 zinc finger protein 7 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034329 [exp] 124 / 7e-34 AT1G68480 107 / 3e-27 JAGGED, C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10041443 [exp] 110 / 2e-28 AT1G68480 103 / 9e-26 JAGGED, C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10022204 [exp] 45 / 3e-06 AT3G09290 67 / 2e-15 telomerase activator1 (.1) Lus10033867 [exp] 46 / 5e-06 AT5G43540 65 / 1e-13 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10021213 [exp] 46 / 6e-06 AT3G09290 73 / 2e-16 telomerase activator1 (.1) Lus10026597 [exp] 45 / 8e-06 AT1G66140 85 / 1e-20 zinc finger protein 4 (.1) Lus10014755 [exp] 45 / 1e-05 AT5G43540 63 / 5e-13 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10008698 [exp] 45 / 2e-05 AT1G80730 86 / 2e-19 ARABIDOPSIS THALIANA ZINC-FINGER PROTEIN 1, zinc-finger protein 1 (.1) Lus10041160 [exp] 45 / 2e-05 AT5G43540 69 / 8e-15 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10010388 [exp] 44 / 6e-05 AT1G24625 88 / 4e-21 zinc finger protein 7 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.008G121200.2 pacid=42808735 polypeptide=Potri.008G121200.2.p locus=Potri.008G121200 ID=Potri.008G121200.2.v4.1 annot-version=v4.1 ATGAGACCCGAGAACAACCCGTTAGACCTCAACAACTTGCCTGAGGATTACTCTAGAGATGGTAAACAAGTCCTTGATGAAGGCTCTTCTTCTGGCTGCA AGAAAAAGAAAAACGGCGCTAAGGATGGGAAAGAAGAGTGTGGTAAGGTCTATGAGTGTAGGTTTTGTTCCCTCAAGTTCTGCAAATCTCAAGCTCTTGG AGGGCACATGAACCGACACAGACAAGAGAGGGAGACAGAAACACTGAACCGGGCTCGACAACTGGTCTTCAGTAGTGATAACCTAGCCGCCCCTGTGGCT CACCTAGGCTGCCATCCAATGGGAACAGGGAGCTACCACCCAGCAGGCAACATTGGAGATCCATTTAGATCAGCGTACACAGTACCAAGACTGTTCCCTA GTTCTTCATCAACTCTCTTACCAGCACCAGCACCAGCACCACAACCTCCTCATCAACCGTATCTATACACATCTCCTTCACGCCTCCCAGCTTCCTATAA CTCACAGTATCCTCAACAGCCCATAAACGATTATTACATTGGACATGTACTCAACAACACTTCACAAACACACCCTTCCCACCAGAACATGAACTACAAC ATGAGTGCCTCAGAATCCAATTACACTTGCATTGGTGCACCAGTAGCTCACGGTGGGTTCGGACTTGGTTCAAGCCGTAGCACGGAGGGAAGCGGTAGAG ATGGATCACTGAGCAATCAGGAAGATGGTTTGAATTGGGGAAGGAGCTATGCAGCAGGAGGACAGCAGCATTTGGATCATCCTTCCTCGATCAATCGGTT TCAAGATGGGTTTTAA
AA sequence Show only first row Show all	>Potri.008G121200.2 pacid=42808735 polypeptide=Potri.008G121200.2.p locus=Potri.008G121200 ID=Potri.008G121200.2.v4.1 annot-version=v4.1 MRPENNPLDLNNLPEDYSRDGKQVLDEGSSSGCKKKKNGAKDGKEECGKVYECRFCSLKFCKSQALGGHMNRHRQERETETLNRARQLVFSSDNLAAPVA HLGCHPMGTGSYHPAGNIGDPFRSAYTVPRLFPSSSSTLLPAPAPAPQPPHQPYLYTSPSRLPASYNSQYPQQPINDYYIGHVLNNTSQTHPSHQNMNYN MSASESNYTCIGAPVAHGGFGLGSSRSTEGSGRDGSLSNQEDGLNWGRSYAAGGQQHLDHPSSINRFQDGF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G68480	C2H2ZnF	JAG	JAGGED, C2H2 and C2HC zinc fin...		Potri.008G121200 [exp]	0	1
AT3G16370			GDSL-like Lipase/Acylhydrolase...		Potri.001G191600 [exp]	2.23	0.9849
					Potri.001G284032 [exp]	5.74	0.9822
AT3G16370			GDSL-like Lipase/Acylhydrolase...		Potri.006G144400 [exp]	7.00	0.9797
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Potri.016G056600 [exp]	9.38	0.9819
AT5G20240	MADS	PI, PISTILLATA	PISTILLATA, K-box region and M...		Potri.002G079000 [exp]	9.48	0.9659	Pt-MADS2.1
AT1G32780			GroES-like zinc-binding dehydr...		Potri.011G152900 [exp]	10.77	0.9604
AT1G54870			NAD(P)-binding Rossmann-fold s...		Potri.010G092400 [exp]	11.66	0.9796
AT1G32780			GroES-like zinc-binding dehydr...		Potri.011G152800 [exp]	13.63	0.9497
AT5G44120		ATCRA1, CRU1, C...	CRUCIFERINA, RmlC-like cupins ...		Potri.019G004500 [exp]	21.21	0.9761	QLEG.3
AT5G60740		ABCG28	ATP-binding cassette G28, ABC ...		Potri.001G058900 [exp]	25.07	0.9583

Compare expression of checked genes

Potri.008G121200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.