Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13410 560 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G08070 430 / 5e-143 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G29230 422 / 5e-142 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G29760 419 / 5e-139 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G02750 406 / 2e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G44880 395 / 4e-132 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT2G13600 391 / 2e-128 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G48910 378 / 3e-124 LPA66 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G15930 372 / 3e-121 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G22690 370 / 8e-119 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G040100 [exp] 440 / 4e-147 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G044700 [exp] 440 / 4e-147 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G125500 [exp] 429 / 1e-144 AT3G29230 829 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G031600 [exp] 426 / 2e-141 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G258766 [exp] 404 / 3e-135 AT1G06150 705 / 0.0 EMBRYO DEFECTIVE 1444, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.006G105700 [exp] 402 / 7e-133 AT3G08820 810 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.017G086100 [exp] 387 / 7e-129 AT5G15300 675 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G217900 [exp] 390 / 1e-128 AT2G22410 530 / 0.0 SLOW GROWTH 1 (.1) Potri.008G106500 [exp] 384 / 3e-127 AT2G29760 422 / 4e-139 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021069 [exp] 733 / 0 AT1G13410 533 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10021068 [exp] 733 / 0 AT1G13410 533 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017243 [exp] 726 / 0 AT1G13410 539 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030053 [exp] 415 / 1e-137 AT1G08070 884 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014113 [exp] 410 / 5e-137 AT3G29230 767 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10019797 [exp] 406 / 2e-135 AT3G29230 768 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10033026 [exp] 406 / 1e-133 AT1G08070 921 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003422 [exp] 397 / 3e-132 AT2G44880 679 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10029436 [exp] 397 / 4e-131 AT3G08820 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10009269 [exp] 385 / 1e-126 AT2G13600 874 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.008G121400.3 pacid=42808413 polypeptide=Potri.008G121400.3.p locus=Potri.008G121400 ID=Potri.008G121400.3.v4.1 annot-version=v4.1 ATGGAGAATGCCCACAAAGTGTTCGATCAAATTCCCGAACCAAATGCCTCTATCTGGAACGCAATGTTTAGAGGCTATTCACAAAATGAATCTCACAAGG ACGTTATAGTCTTGTTTAGACAAATGAAGGGATTGGATGTAATGCCTAATTGCTTCACTTTCCCAGTTATTCTTAAATCTTGTGTCAAGATTAATGCATT GAAAGAAGGTGAGGAGGTGCACTGTTTTGTGATTAAAAGTGGATTTAGGGCGAACCCTTTTGTGGCTACTACGTTGATTGATATGTATGCTAGTGGTGGA GCAATACATGCGGCTTATAGAGTTTTTGGCGAGATGATAGAGAGGAATGTGATTGCTTGGACCGCAATGATCAATGGCTACATTACTTGTTGTGATCTAG TAACCGCGCGTCGCCTTTTTGATCTGGCTCCTGAGCGGGATATTGTGCTGTGGAATACTATGATTTCGGGTTATATTGAGGCAAAGGATGTAATACGAGC ACGGGAGCTTTTTGATAAGATGCCAAACAAGGATGTCATGTCGTGGAATACAGTTTTGAATGGTTATGCTAGTAATGGGGATGTCATGGCTTGTGAGAGA TTGTTTGAAGAGATGCCAGAAAGGAATGTTTTTTCGTGGAATGCATTGATTGGAGGGTATACAAGGAATGGCTGTTTCTCTGAGGTATTGAGTGCTTTTA AAAGGATGTTAGTTGATGGAACTGTAGTTCCTAATGATGCTACACTTGTGAATGTGTTGTCTGCTTGTGCGAGATTAGGTGCTCTAGATTTGGGCAAGTG GGTACATGTGTATGCAGAGAGTCATGGATATAAAGGAAATGTATACGTGAGGAATGCTTTGATGGATATGTATGCAAAATGTGGGGTTGTGGAAACTGCT CTCGATGTGTTTAAAAGCATGGATAATAAAGACCTGATTAGCTGGAATACCATAATTGGTGGATTGGCTGTGCACGGGCATGGAGCTGATGCCTTAAATT TGTTTTCTCATATGAAGATAGCTGGAGAAAACCCAGATGGAATCACCTTTATAGGCATTTTGTGTGCTTGCACGCACATGGGTTTGGTTGAAGATGGTTT CTCGTATTTCAAATCAATGACTGATGATTATTCGATTGTGCCTCGAATCGAACACTATGGTTGTATTGTTGATTTGCTAGGGCGAGCTGGTCTCTTAGCC CATGCTGTGGATTTCATTAGAAAGATGCCCATTGAAGCCGATGCTGTTATCTGGGCTGCATTGCTGGGGGCATGTAGGGTTTATAAAAATGTTGAATTGG CTGAGCTGGCTCTTGAAAAACTCATTGAATTTGAGCCAAAGAACCCTGCAAATTATGTGATGCTTTCAAACATATACGGGGACTTTGGAAGATGGAAAGA TGTAGCACGACTAAAAGTTGCAATGAGGGATACTGGGTTCAAAAAATTACCAGGATGTAGTTTGATTGAGGTCAATGATTATTTGGTTGAGTTTTATTCA TTGGATGAAAGACACCCTGAGAAGGAGCAAATATATGGCACCTTGAGAACACTAACAAAATTGTTGAGATCATCAGGCTATGTACCAGGTTTAATGGAGC TGGACGAGAGAAACTGA
AA sequence Show only first row Show all	>Potri.008G121400.3 pacid=42808413 polypeptide=Potri.008G121400.3.p locus=Potri.008G121400 ID=Potri.008G121400.3.v4.1 annot-version=v4.1 MENAHKVFDQIPEPNASIWNAMFRGYSQNESHKDVIVLFRQMKGLDVMPNCFTFPVILKSCVKINALKEGEEVHCFVIKSGFRANPFVATTLIDMYASGG AIHAAYRVFGEMIERNVIAWTAMINGYITCCDLVTARRLFDLAPERDIVLWNTMISGYIEAKDVIRARELFDKMPNKDVMSWNTVLNGYASNGDVMACER LFEEMPERNVFSWNALIGGYTRNGCFSEVLSAFKRMLVDGTVVPNDATLVNVLSACARLGALDLGKWVHVYAESHGYKGNVYVRNALMDMYAKCGVVETA LDVFKSMDNKDLISWNTIIGGLAVHGHGADALNLFSHMKIAGENPDGITFIGILCACTHMGLVEDGFSYFKSMTDDYSIVPRIEHYGCIVDLLGRAGLLA HAVDFIRKMPIEADAVIWAALLGACRVYKNVELAELALEKLIEFEPKNPANYVMLSNIYGDFGRWKDVARLKVAMRDTGFKKLPGCSLIEVNDYLVEFYS LDERHPEKEQIYGTLRTLTKLLRSSGYVPGLMELDERN

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G13410			Tetratricopeptide repeat (TPR)...		Potri.008G121400 [exp]	0	1
AT3G08820			Pentatricopeptide repeat (PPR)...		Potri.006G105700 [exp]	1.00	0.9341
AT4G13650			Pentatricopeptide repeat (PPR)...		Potri.009G035100 [exp]	1.41	0.9313
AT3G56550			Pentatricopeptide repeat (PPR)...		Potri.016G029500 [exp]	1.73	0.9273
AT4G08210			Pentatricopeptide repeat (PPR-...		Potri.002G087400 [exp]	2.82	0.9261
AT3G50420			Pentatricopeptide repeat (PPR)...		Potri.005G131800 [exp]	3.87	0.9258
AT2G39620			Pentatricopeptide repeat (PPR)...		Potri.008G052200 [exp]	4.58	0.9161
AT4G13650			Pentatricopeptide repeat (PPR)...		Potri.009G027400 [exp]	6.78	0.8660
AT5G39350			Tetratricopeptide repeat (TPR)...		Potri.004G124400 [exp]	9.38	0.9077
AT5G44230			Pentatricopeptide repeat (PPR)...		Potri.005G119000 [exp]	10.00	0.8899
AT1G69350			Tetratricopeptide repeat (TPR)...		Potri.008G093000 [exp]	10.19	0.9157

Compare expression of checked genes

Potri.008G121400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.