Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68330 134 / 7e-38 unknown protein AT1G67050 106 / 2e-27 unknown protein AT1G48780 62 / 4e-11 unknown protein AT3G18300 57 / 2e-09 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G122800 [exp] 409 / 4e-146 AT1G68330 136 / 7e-39 unknown protein Potri.017G115700 [exp] 155 / 2e-46 AT1G67050 112 / 6e-30 unknown protein Potri.004G098700 [exp] 149 / 5e-44 AT1G67050 117 / 6e-32 unknown protein Potri.015G045700 [exp] 139 / 3e-40 AT1G48780 107 / 8e-28 unknown protein Potri.012G055300 [exp] 119 / 1e-32 AT1G48780 105 / 2e-27 unknown protein Potri.017G115801 [exp] 41 / 0.0004 AT1G67050 51 / 1e-07 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034341 [exp] 191 / 1e-59 AT1G68330 117 / 4e-31 unknown protein Lus10041430 [exp] 185 / 2e-57 AT1G68330 111 / 4e-29 unknown protein Lus10009004 [exp] 83 / 3e-18 AT1G48780 98 / 7e-24 unknown protein Lus10009633 [exp] 82 / 3e-18 AT1G48780 93 / 5e-22 unknown protein Lus10009160 [exp] 77 / 2e-16 AT1G67050 152 / 1e-44 unknown protein Lus10028485 [exp] 64 / 2e-11 AT1G67050 160 / 8e-48 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.008G122300.1 pacid=42808488 polypeptide=Potri.008G122300.1.p locus=Potri.008G122300 ID=Potri.008G122300.1.v4.1 annot-version=v4.1 ATGGCTATAGATGTCTGCTCGGAGATTTCAAGCGCGGGAATCAGTCCAAGAATCTCCTTTTCGCATGATCTCAACCAAACAACAGATGCTGTTTCCATTG AAGATCATTACCATCGTAGATTAGATTCATCTCTGTTGGATTCTGATTTCGATTTCTGCTTTGGCAACAGCTTTGTTCAAGAATTGTCTTCTGCTGATGA GCTCTTCTCTAATGGCAAGATCCTGCCTGTCGAAATCAAGAAACATATCATTTCCTCTAAAGATACTGATCAGCTGAAGTCTTTGATCTCTCAGCCTCAG CGAAACAGCTCCGAGACCACAGAGAAGAAGCAACTGAAAGAATTCTTGTCAATGAGTCTTGATGCAGATGAAAAGCCCGCATCGAAATCTTTTTGGCAGT TCAAGAGAAGCAATAGTCTGAATTGTGATAGCACTAGAAGCAAAGGCCTCATTCGATCGCTACACTTTCTTTCAAGAAGCAACTCTACTGGGTCAGCTCC AAATCCTCCAAAACAAGCAATGTTATCCAAGGAGACTCAAAAGCCTCAATTGCAGAAACAAGCTTCTGTTCCAAGTAGAAAATCATCGGTACCCAGTTCT GCTGCATTTTATTCTTACAATTCACAGCAGAAGCCCCCTCTGTTAAGGAAATGTGGTTCTTATGGAAACGGGGTCAGAATTAGTCCTGTCTTGAATATAC CACCACCCTACATTTCCAGAGGAACAGTCAATCTTTTTGGTTTAGGTTCGCTGTTTTGTAACGGTAAGGTAAAAAAGAAGAAGAGATGA
AA sequence Show only first row Show all	>Potri.008G122300.1 pacid=42808488 polypeptide=Potri.008G122300.1.p locus=Potri.008G122300 ID=Potri.008G122300.1.v4.1 annot-version=v4.1 MAIDVCSEISSAGISPRISFSHDLNQTTDAVSIEDHYHRRLDSSLLDSDFDFCFGNSFVQELSSADELFSNGKILPVEIKKHIISSKDTDQLKSLISQPQ RNSSETTEKKQLKEFLSMSLDADEKPASKSFWQFKRSNSLNCDSTRSKGLIRSLHFLSRSNSTGSAPNPPKQAMLSKETQKPQLQKQASVPSRKSSVPSS AAFYSYNSQQKPPLLRKCGSYGNGVRISPVLNIPPPYISRGTVNLFGLGSLFCNGKVKKKKR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G68330			unknown protein		Potri.008G122300 [exp]	0	1
AT5G66600			Protein of unknown function, D...		Potri.004G150000 [exp]	5.65	0.8792
AT1G60500		DRP4C	Dynamin related protein 4C (.1...		Potri.003G024200 [exp]	7.07	0.8532
AT2G41550			Rho termination factor (.1)		Potri.016G043300 [exp]	8.12	0.8634
AT5G45480			Protein of unknown function (D...		Potri.010G154932 [exp]	12.12	0.7705
AT1G60500		DRP4C	Dynamin related protein 4C (.1...		Potri.003G024600 [exp]	13.41	0.8338
AT5G45530			Protein of unknown function (D...		Potri.015G113500 [exp]	14.49	0.8286
AT5G17770		CBR1, ATCBR	NADH:cytochrome B5 reductase 1...		Potri.010G246800 [exp]	15.23	0.8695
AT2G02990		RNS1, ATRNS1	ribonuclease 1 (.1)		Potri.013G134400 [exp]	17.88	0.8662
AT2G34190			Xanthine/uracil permease famil...		Potri.004G058800 [exp]	20.90	0.8315
AT3G50780			unknown protein		Potri.005G129700 [exp]	23.74	0.8484

Compare expression of checked genes

Potri.008G122300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.