Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38830 228 / 2e-72 Cysteinyl-tRNA synthetase, class Ia family protein (.1) AT2G31170 218 / 8e-70 FIONA, SYCOARATH ,SYCO ARATH cysteinyl t-RNA synthetase, FIONA, Cysteinyl-tRNA synthetase, class Ia family protein (.1.2) AT3G56300 205 / 8e-64 Cysteinyl-tRNA synthetase, class Ia family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G024300 [exp] 219 / 3e-68 AT2G31170 856 / 0.0 cysteinyl t-RNA synthetase, FIONA, Cysteinyl-tRNA synthetase, class Ia family protein (.1.2) Potri.004G226700 [exp] 41 / 0.0005 AT1G09620 1647 / 0.0 ATP binding;leucine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1) Potri.003G003900 [exp] 40 / 0.0007 AT1G09620 1627 / 0.0 ATP binding;leucine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1) Potri.010G122500 [exp] 0 / 1 AT5G38830 682 / 0.0 Cysteinyl-tRNA synthetase, class Ia family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010336 [exp] 228 / 2e-72 AT5G38830 684 / 0.0 Cysteinyl-tRNA synthetase, class Ia family protein (.1) Lus10034343 [exp] 228 / 6e-72 AT5G38830 686 / 0.0 Cysteinyl-tRNA synthetase, class Ia family protein (.1) Lus10041428 [exp] 228 / 6e-72 AT5G38830 687 / 0.0 Cysteinyl-tRNA synthetase, class Ia family protein (.1) Lus10021862 [exp] 226 / 2e-71 AT5G38830 686 / 0.0 Cysteinyl-tRNA synthetase, class Ia family protein (.1) Lus10001953 [exp] 212 / 3e-68 AT2G31170 305 / 5e-102 cysteinyl t-RNA synthetase, FIONA, Cysteinyl-tRNA synthetase, class Ia family protein (.1.2) Lus10001921 [exp] 218 / 6e-68 AT2G31170 831 / 0.0 cysteinyl t-RNA synthetase, FIONA, Cysteinyl-tRNA synthetase, class Ia family protein (.1.2) Lus10025653 [exp] 40 / 0.001 AT1G09620 566 / 0.0 ATP binding;leucine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [poplar] [flax] HUP PF09334 [poplar] [flax] tRNA-synt_1g tRNA synthetases class I (M)
Representative CDS sequence Show only first row Show all	>Potri.008G122901.2 pacid=42807376 polypeptide=Potri.008G122901.2.p locus=Potri.008G122901 ID=Potri.008G122901.2.v4.1 annot-version=v4.1 ATGACTCTGCATATGTGGTGGAGGGAGATGTCTTCTTTGCGGTTGATAAATCCCCAAATTATGGTTAGTTATCTGGGCAGAGGCTGGAAAATAATAGAGT GGGGGAACGTGTTGCTGTTGACTCGAGAAAACATAATCCTGCTGACTTTGCATTGTGGAAGGTATAAATCTCACAAGTACCTGAAATTTATAATTCGTTT GCACTGCACCATATCCGATGTCTACTTGTTTTTGCAGGCCGCAAAGCCAGGTGATCCAAGTTGGGAGAGTCCATGGGGTCCTGGAAGGCCAGGATGGCAC ATAGAATGCAGTGCAATGAGTGCTCATTATCTGACTTTCAAATTTGACATTCATGGTGGTGGGATTGATTTGATTTTTCCGCATCATGAGAATGAGATTG CCCAGAGTTGTGCTGCATGTGAAGAGAGCAGCGTGAGTTACTGGTTGCATAATGGTCATGTCACAAATAACAATGAGAAAATGTCAAAATCATTGGGTAA TTTTTTCACAATCCACCAGATTACTGAACGGTACTATCCTCTGGCTTTGAGACACTTCTTGATAAGTGCACACTACCGCTCTCCCCTCAATTACTTTGTT TTGCAGCTGGAAGGTGCATCAGACGCTGTCTTCTACATTTAA
AA sequence Show only first row Show all	>Potri.008G122901.2 pacid=42807376 polypeptide=Potri.008G122901.2.p locus=Potri.008G122901 ID=Potri.008G122901.2.v4.1 annot-version=v4.1 MTLHMWWREMSSLRLINPQIMVSYLGRGWKIIEWGNVLLLTRENIILLTLHCGRYKSHKYLKFIIRLHCTISDVYLFLQAAKPGDPSWESPWGPGRPGWH IECSAMSAHYLTFKFDIHGGGIDLIFPHHENEIAQSCAACEESSVSYWLHNGHVTNNNEKMSKSLGNFFTIHQITERYYPLALRHFLISAHYRSPLNYFV LQLEGASDAVFYI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G38830			Cysteinyl-tRNA synthetase, cla...		Potri.008G122901 [exp]	0	1
AT5G44090			Calcium-binding EF-hand family...		Potri.005G227100 [exp]	1.00	0.8364
AT5G19840			2-oxoglutarate (2OG) and Fe(II...		Potri.005G215200 [exp]	2.44	0.8291
AT1G74580			Pentatricopeptide repeat (PPR)...		Potri.010G234500 [exp]	2.82	0.8309
AT1G49180			protein kinase family protein ...		Potri.019G011300 [exp]	3.46	0.8228
					Potri.007G026200 [exp]	4.69	0.7814
AT3G55080			SET domain-containing protein ...		Potri.008G047400 [exp]	7.00	0.7991
AT1G53040			Protein of unknown function (D...		Potri.011G119300 [exp]	8.00	0.7887
AT3G57570			ARM repeat superfamily protein...		Potri.006G054100 [exp]	9.94	0.7851
AT5G01270		CPL2, ATCPL2	carboxyl-terminal domain (ctd)...		Potri.006G099302 [exp]	10.00	0.8028
AT3G61960			Protein kinase superfamily pro...		Potri.014G107000 [exp]	13.85	0.6991

Compare expression of checked genes

Potri.008G122901 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.