Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18290 1604 / 0 BTS, EMB2454 embryo defective 2454, BRUTUS, zinc finger protein-related (.1) AT1G74770 533 / 6e-168 zinc ion binding (.1) AT1G18910 530 / 5e-167 zinc ion binding;zinc ion binding (.1) AT3G62970 197 / 1e-56 zinc finger (C3HC4-type RING finger) family protein (.1) AT5G22920 187 / 6e-53 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1) AT5G25560 187 / 2e-52 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1.2.3.4) AT5G18650 179 / 4e-50 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1) AT2G40830 47 / 5e-05 RHC1A RING-H2 finger C1A (.1.2.3) AT3G10815 46 / 6e-05 RING/U-box superfamily protein (.1) AT3G56580 45 / 0.0002 RING/U-box superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G122200 [exp] 2335 / 0 AT3G18290 1578 / 0.0 embryo defective 2454, BRUTUS, zinc finger protein-related (.1) Potri.012G055100 [exp] 1669 / 0 AT3G18290 1641 / 0.0 embryo defective 2454, BRUTUS, zinc finger protein-related (.1) Potri.015G066600 [exp] 431 / 7e-130 AT1G74770 1199 / 0.0 zinc ion binding (.1) Potri.009G005700 [exp] 189 / 4e-53 AT5G22920 437 / 8e-156 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1) Potri.014G134400 [exp] 187 / 5e-53 AT3G62970 393 / 3e-139 zinc finger (C3HC4-type RING finger) family protein (.1) Potri.008G205400 [exp] 183 / 8e-52 AT5G18650 466 / 2e-168 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1) Potri.006G245400 [exp] 181 / 2e-50 AT5G25560 475 / 7e-171 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1.2.3.4) Potri.006G121801 [exp] 170 / 6e-47 AT5G22920 398 / 6e-141 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1) Potri.002G085800 [exp] 44 / 0.0005 AT1G60360 233 / 4e-74 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005111 [exp] 1937 / 0 AT3G18290 1592 / 0.0 embryo defective 2454, BRUTUS, zinc finger protein-related (.1) Lus10034346 [exp] 1800 / 0 AT3G18290 1467 / 0.0 embryo defective 2454, BRUTUS, zinc finger protein-related (.1) Lus10042190 [exp] 494 / 8e-161 AT1G18910 563 / 0.0 zinc ion binding;zinc ion binding (.1) Lus10008628 [exp] 408 / 1e-121 AT1G74770 1024 / 0.0 zinc ion binding (.1) Lus10042189 [exp] 299 / 1e-84 AT1G18910 583 / 0.0 zinc ion binding;zinc ion binding (.1) Lus10042188 [exp] 220 / 1e-65 AT1G74770 253 / 2e-78 zinc ion binding (.1) Lus10012811 [exp] 195 / 2e-55 AT5G18650 465 / 1e-167 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1) Lus10008627 [exp] 196 / 2e-52 AT2G02800 475 / 6e-164 protein kinase 2B (.1.2) Lus10033969 [exp] 177 / 1e-49 AT5G18650 449 / 2e-161 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1) Lus10023914 [exp] 116 / 8e-28 AT5G22920 225 / 8e-72 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01814 [poplar] [flax] Hemerythrin Hemerythrin HHE cation binding domain PF05495 [poplar] [flax] zf-CHY CHY zinc finger CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain CL0229 [poplar] [flax] PF14599 [poplar] [flax] zinc_ribbon_6 Zinc-ribbon
Representative CDS sequence Show only first row Show all	>Potri.008G123300.1 pacid=42806235 polypeptide=Potri.008G123300.1.p locus=Potri.008G123300 ID=Potri.008G123300.1.v4.1 annot-version=v4.1 ATGGCGACGCCATTTTCTGGTATAGACAGAGGTGGAGCAGGAGGAGTAGCGGTAATGGCAGGTCCATTGAATCCAATCGATCCTTCAACACCGTCTAAAA CTTGCCTGAAAAGTTCGGCTTTGAAATCTCCAATTCTTATCTTCCTTTTCTTCCATAAAGCTATTAGGTCCGAGCTCGATGGCCTCCACAGCGCCGCCAT CGCTTTTGCTACTACTGGTGGCGATATTGAGCCGTTACTTGAGCGATATCACTTTTTTCGCTCGATATATAAGCATCACTGCAATGCTGAGGACGAGGTT ATCTTTCCTGCTCTTGATATCCGTGTGAAGAATGTGGCACGGACTTACTCCCTTGAACATGAGGGGGAGAGTGTTCTTTTTGATCAATTATTTGAGCTGC TTGATTTAAATATGCAAAGTGAAGAAATCTATCGGAGAGAGTTAGCCTCTCGTACAGGAGCCCTTCAAACATCAATTGATCAGCATATGTCAAAGGAAGA GGAACAGGTCTTTCCCTTGCTTATTGAGAAGTTTTCATTTGAAGAGCAGGCTTTCCTGGTATGGCAGTTTCTGTGCAGCATTCCTGTTAATATGATGACA GAGTTTCTTCCTTGGCTTTCTTCCTCTATATCAACTGATGAACAACAAGATATGCACATGTGCTTGTACAAGATAATCCCAGAAGAGAAACTTCTCCGGC AGGTTATTTTCTCCTGGATGAAAGGGACAAAATTGTCTGATACGTGTAAGAGTTGTGAAGATAATTCTAAAGCCTGTTGTCAAGATTCAGGAGCACCAAC TTTAGAGTGTCAAAGCATGAAAAGACACTGTGCATGTGAATCTTCTGGAGTGGGTAAAAGGAAATATATGGAGCTAAATTGTGATGCTATCATTTCCACT GAATTCCATCCAATAAATGAAATTCTGCTCTGGCACAATGCCATTAAAAGAGAGTTGAATGATATAACTGAGGCAGCTAGGAGCATACAGCTTTCGGGAG ATTTTTCTAATCTGTCTTCATTCAACAAGAGGCTGCAATTCATTGCAGAAGTTTGCATCTTTCACAGTATTGCTGAGGACAAGGTTATATTCCCTGCTGT AGATGCAGAGCTCTCTTTTGCCCATGAACATGCAGAAGAAGAAATTCAGTTTGACAAGCTTAGGTGCCTGATAGAAAGCATTCAAAGTGCTGGAGCCCAC ACATCTCTTACTGATTTCTATACAAAGTTGTGCTCCCAAGCTGATCAAATCATGGACAGCATACAGAAACACTTCCAAAATGAGGAAGTTCAGGTTCTTC CACTTGCTCGAAAGCACTTTAGTGCCAAAAGACAGCGTGAACTTCTTTATCAAAGCTTGCGTGTGATGCCCTTGAAATTGATTGAATGTGTCTTACCATG GTTGGTAGGGTCACTTAGTGAAGAGGAAGCAAGGTCTTTTCTTCAAAATATGTACATGGCAGCTCCAGCTTCAGATTCTGCATTGGTTACACTTTTTTCT GGTTGGGCATGTAAGGGTCGTTCTAAAAATGTTTGTTTGTCTTCAAGTGCCACTGGTTTTTGTCCTGTGAGAATCTTGGCTGGGACCGAGGAAGTTACCA AGCAGCGGTTCTGTCCATGCAACTCTCGGTCATCTGTTGGTGATGAGCCTTCCTTGGTGCAAGCAGATGGAGCTGATGACTCTAGAAGGCCGGGCAAATG TGGAAACTTGGTAGTTCGGGAAGACAACAATGCTTGTCCCTCTACAGAGCCTGTTGATACCCAAAAATCATCTTGTAGTAATAATTCTTGTTGTGTCCCT GGGTTAGGAGTAAATACCAACAATCTGGGAATTAGTTCTCTTGCTGTGGCCAAATCTCTACGCTCATCTTTTAGCCCTTCTGCTCCTTCCCTTAACTCCA GCCTTTTCAACTGGGAAATGGACACAAGCCCCACCAATATTGGTTGCTCATCACGGCCTATTGATAACATATTCCAATTTCATAAAGCCATCCGCAAAGA CCTGGAGTATTTAGATGTTGAATCTGGAAAACTAAATGATTGCAATGAAACTTTGCTGAGGCAGTTTACTGGTAGATTTCGTTTGTTGTGGGGTTTGTAT AGAGCTCATAGTAATGCAGAGGATGAAATAGTATTCCCTGCATTAGAATCTAAAGAGACACTTCATAATGTTAGCCATTCTTACACTCTGGACCACAAGC AGGAGGAGAAGTTATTTGAAGATATCTCCTCTGCACTTTCAGAGCTTACTCAGCTTCATGAATACATGAAGAATACAAATCATGCTGATGATTTAATTGG AAAGTGTGCTGATTCGTCTGATTGTAATGATTCTGTTAGACAGTATAATGAGCTTGCAACAAAGCTTCAGGGGATGTGCAAATCCATTAGAGTAACTCTG GATCAACATGTTTTCCGGGAAGAACTTGAGTTGTGGCCATTATTTGACAGGCATTTTTCCGTAGAGGAGCAGGACAAAATTGTTGGTCAAATAATTGGCA CCACTGGTGCAGAGGTGCTTCAATCGATGTTGCCATGGGTAACATCTGCTCTCACCCAGGAGGAGCAGAACAGGATGATGGACACGTGGAAGCAGGCAAC CAAAAATACAATGTTTAGCGAGTGGCTTAATGAATGGTGGGAAGGAACTTCTGCTGCAACACCACTTAAAACAGCATCAGAGAGTTGTATTTCACTAGGT AACGATCTCCATGCAAGTCTGGATCAAAGTGATCATACATTTAAGCCTGGGTGGAAAGATATTTTTCGGATGAATCAAAATGAGCTAGAAGCCGAGATTA GGAAAGTTTCTCGAGATTCAACTCTTGATCCAAGAAGAAAAGCTTATCTTATTCAAAATCTTATGACTAGCCGCTGGATAGCTTCTCAGCAGAAGTCACC TCAAGCAAGAACTGGTGACCATTCAAATGGTGGAGACTTACTTGGATGTTCTCCTTCATTTCGAGATCCAGATAAACAAGTATTTGGGTGTGAGCATTAC AAAAGAAATTGTAAATTACGTGCTACTTGCTGTGGCAAGTTATTTGCATGTAGGTTCTGCCATGATAAAGTCAGTGACCATTCGATGGATAGGAAGGCTA CATCTGAAATGATGTGTATGCGCTGCCTCAGAATTCAGCCTGTTGGACCAGTTTGCACCTCTGTTTCCTGTGGTGGGTTCTCAATGGCAAAGTACTATTG CAGTGTCTGCAAATTTTTTGATGATGAAAGGGCTGTTTATCATTGCCCTTTCTGCAATTTATGCCGTGTGGGAACTGGTCTTGGTGTTGACTTCTTTCAT TGCATGAAATGCAATTGTTGCCTGGCAATGAAACTAGCTGACCACAAGTGTCGAGAGAAAGGTCTGGAAACAAATTGTCCCATCTGCTGTGATGACATGT TCACTTCAAGTGCAAGCGTCAAAGCTCTTCCCTGCGGTCATTTCATGCATTCAACTTGTTTTCAGGCATACACTTGCAGTCACTACATCTGCCCAATTTG TAGCAAATCTCTGGGAGACATGTCGGTTTACTTTGGTATGCTTGATGCACTATTGGCTTCTGAGGAGCTTCCAGAAGAGTACCGGGATCGCTGTCAGGAT ATATTGTGCAATGACTGTGACAAGAAGGGCACAGCACCTTTTCATTGGCTATACCACAAGTGTAGGTTGTGTGGGTCATACAATACCAGGGTAATTAAGG TTGATTCAACAGATTCAAACTGCACAACTTTGAACCAGTGA
AA sequence Show only first row Show all	>Potri.008G123300.1 pacid=42806235 polypeptide=Potri.008G123300.1.p locus=Potri.008G123300 ID=Potri.008G123300.1.v4.1 annot-version=v4.1 MATPFSGIDRGGAGGVAVMAGPLNPIDPSTPSKTCLKSSALKSPILIFLFFHKAIRSELDGLHSAAIAFATTGGDIEPLLERYHFFRSIYKHHCNAEDEV IFPALDIRVKNVARTYSLEHEGESVLFDQLFELLDLNMQSEEIYRRELASRTGALQTSIDQHMSKEEEQVFPLLIEKFSFEEQAFLVWQFLCSIPVNMMT EFLPWLSSSISTDEQQDMHMCLYKIIPEEKLLRQVIFSWMKGTKLSDTCKSCEDNSKACCQDSGAPTLECQSMKRHCACESSGVGKRKYMELNCDAIIST EFHPINEILLWHNAIKRELNDITEAARSIQLSGDFSNLSSFNKRLQFIAEVCIFHSIAEDKVIFPAVDAELSFAHEHAEEEIQFDKLRCLIESIQSAGAH TSLTDFYTKLCSQADQIMDSIQKHFQNEEVQVLPLARKHFSAKRQRELLYQSLRVMPLKLIECVLPWLVGSLSEEEARSFLQNMYMAAPASDSALVTLFS GWACKGRSKNVCLSSSATGFCPVRILAGTEEVTKQRFCPCNSRSSVGDEPSLVQADGADDSRRPGKCGNLVVREDNNACPSTEPVDTQKSSCSNNSCCVP GLGVNTNNLGISSLAVAKSLRSSFSPSAPSLNSSLFNWEMDTSPTNIGCSSRPIDNIFQFHKAIRKDLEYLDVESGKLNDCNETLLRQFTGRFRLLWGLY RAHSNAEDEIVFPALESKETLHNVSHSYTLDHKQEEKLFEDISSALSELTQLHEYMKNTNHADDLIGKCADSSDCNDSVRQYNELATKLQGMCKSIRVTL DQHVFREELELWPLFDRHFSVEEQDKIVGQIIGTTGAEVLQSMLPWVTSALTQEEQNRMMDTWKQATKNTMFSEWLNEWWEGTSAATPLKTASESCISLG NDLHASLDQSDHTFKPGWKDIFRMNQNELEAEIRKVSRDSTLDPRRKAYLIQNLMTSRWIASQQKSPQARTGDHSNGGDLLGCSPSFRDPDKQVFGCEHY KRNCKLRATCCGKLFACRFCHDKVSDHSMDRKATSEMMCMRCLRIQPVGPVCTSVSCGGFSMAKYYCSVCKFFDDERAVYHCPFCNLCRVGTGLGVDFFH CMKCNCCLAMKLADHKCREKGLETNCPICCDDMFTSSASVKALPCGHFMHSTCFQAYTCSHYICPICSKSLGDMSVYFGMLDALLASEELPEEYRDRCQD ILCNDCDKKGTAPFHWLYHKCRLCGSYNTRVIKVDSTDSNCTTLNQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G18290		BTS, EMB2454	embryo defective 2454, BRUTUS,...		Potri.008G123300 [exp]	0	1
AT5G07290		AML4	MEI2-like 4 (.1)		Potri.012G107100 [exp]	2.00	0.7028
AT5G42140			Regulator of chromosome conden...		Potri.002G070300 [exp]	11.31	0.6835
AT1G55860		UPL1	ubiquitin-protein ligase 1 (.1...		Potri.001G368600 [exp]	13.71	0.7327
AT4G38600		UPL3, KAK	UBIQUITIN-PROTEIN LIGASE 3, KA...		Potri.009G134300 [exp]	16.30	0.7295
AT3G48190		PIG1, ATATM, AT...	pcd in male gametogenesis 1, A...		Potri.015G076650 [exp]	17.14	0.7061
AT5G03280		CKR1, PIR2, ORE...	ORESARA 3, ORESARA 2, ENHANCED...		Potri.006G127100 [exp]	30.65	0.6910
AT2G36850		CHOR, ATGSL8, A...	CHORUS, glucan synthase-like 8...		Potri.015G089300 [exp]	31.08	0.6861	ATGSL08.2
AT2G37870			Bifunctional inhibitor/lipid-t...		Potri.008G141000 [exp]	37.33	0.6283
AT1G79570			Protein kinase superfamily pro...		Potri.005G095200 [exp]	37.54	0.5657
AT4G30100			P-loop containing nucleoside t...		Potri.005G168300 [exp]	38.18	0.6799

Compare expression of checked genes

Potri.008G123300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.