Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68410 679 / 0 Protein phosphatase 2C family protein (.1.2) AT1G09160 589 / 0 Protein phosphatase 2C family protein (.1.2) AT1G47380 519 / 0 Protein phosphatase 2C family protein (.1) AT5G10740 107 / 6e-26 Protein phosphatase 2C family protein (.1) AT4G31750 107 / 6e-26 WIN2 HOPW1-1-interacting 2 (.1) AT1G22280 104 / 3e-25 PAPP2C phytochrome-associated protein phosphatase type 2C (.1.2.3) AT1G34750 104 / 3e-25 Protein phosphatase 2C family protein (.1) AT1G67820 107 / 4e-25 Protein phosphatase 2C family protein (.1) AT1G43900 105 / 4e-25 Protein phosphatase 2C family protein (.1) AT5G24940 106 / 8e-25 Protein phosphatase 2C family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G121600 [exp] 798 / 0 AT1G68410 635 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.005G021200 [exp] 600 / 0 AT1G09160 642 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.013G011600 [exp] 584 / 0 AT1G09160 604 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.014G031200 [exp] 516 / 0 AT1G47380 717 / 0.0 Protein phosphatase 2C family protein (.1) Potri.002G127300 [exp] 499 / 3e-176 AT1G47380 701 / 0.0 Protein phosphatase 2C family protein (.1) Potri.019G071600 [exp] 116 / 2e-28 AT1G07160 268 / 8e-86 Protein phosphatase 2C family protein (.1) Potri.013G099400 [exp] 113 / 2e-27 AT1G07160 272 / 1e-87 Protein phosphatase 2C family protein (.1) Potri.018G013900 [exp] 108 / 2e-26 AT4G31750 533 / 0.0 HOPW1-1-interacting 2 (.1) Potri.006G267600 [exp] 107 / 5e-26 AT4G31750 535 / 0.0 HOPW1-1-interacting 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020666 [exp] 619 / 0 AT1G09160 662 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10009763 [exp] 523 / 0 AT1G47380 719 / 0.0 Protein phosphatase 2C family protein (.1) Lus10006485 [exp] 523 / 0 AT1G47380 728 / 0.0 Protein phosphatase 2C family protein (.1) Lus10042659 [exp] 523 / 0 AT1G47380 704 / 0.0 Protein phosphatase 2C family protein (.1) Lus10021737 [exp] 511 / 3e-180 AT1G47380 701 / 0.0 Protein phosphatase 2C family protein (.1) Lus10019012 [exp] 110 / 1e-26 AT5G53140 474 / 2e-167 Protein phosphatase 2C family protein (.1) Lus10042275 [exp] 110 / 1e-26 AT1G07160 392 / 1e-135 Protein phosphatase 2C family protein (.1) Lus10020104 [exp] 108 / 2e-26 AT4G31750 523 / 0.0 HOPW1-1-interacting 2 (.1) Lus10042430 [exp] 107 / 3e-26 AT4G31750 452 / 2e-162 HOPW1-1-interacting 2 (.1) Lus10026239 [exp] 107 / 3e-26 AT4G31750 454 / 3e-163 HOPW1-1-interacting 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [poplar] [flax] PP2C PF00481 [poplar] [flax] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Potri.008G123600.9 pacid=42808517 polypeptide=Potri.008G123600.9.p locus=Potri.008G123600 ID=Potri.008G123600.9.v4.1 annot-version=v4.1 ATGTCTTCGGGTGAAGGTAGGCGTCGACGTGATAATCTTGTGCCTCTTGCTGCTTTGATCAGCAGAGAAATGAGGATTGAAAAGATGGACAAGCCAACTG TCAAATATGGTCATGCAGCCCAATCTAGGAAAGGGGAGGATCATTTCCTTATTAAGATGGATTGTCAGCGGGTACCTGGGAATTCGTCATCTACATTTTC TGTATTTGCGATCTTCGATGGGCACAATGGAAATGCTGCAGCAATTTATACGAGAGAGAATTTGTTGAATCATATTTTGGGCGCTATGCCTCGTGGTCTT GGACGTGAGGAGTGGATTCAAGCTTTACCTCGTGCTTTAGTTGCCGGATTTGTGAAGACTGATAAGGAGTTTCAGAGCAGAGGAGAAACTTCGGGCACTA CAGCAACATTTGTAATAGTTGATAGATGGACTGTTACTGTTGCTTCTGTTGGAGACTCACGTTGTATTTTAGATGCTCAGGGTGGTGCCGTTTCCTCCTT GACTGTTGATCACAGACTTGAAGAGAATGTGGAGGAGAGGAAAAGGGTGACTGCAAGTGGTGGGGAAGTTGGAAGGCTTAGCATTGTTGGTGGTGTTGAG GTTGGTCCTCTTCGCTGTTGGCCTGGAGGTTTATGCCTTTCTAGGTCAATTGGAGACATGGATGTTGGAGAGTTTATAGTTCCTGTTCCATATGTCAAGC AAGTGAAACTGTCAAATGCAGGTGGGAGGCTTATAGTTGCTTCTGATGGCATATGGGATGCCTTGTCCTCAGAAATGGCAGCAAAATCTTGCCGTGGGTT ACCAGCTGAACTTGCTGCCAAACAAGTTGTAAAGGAAGCTTTAAGGACACGGGGACTAAAGGATGATACAACCTGCATAGTTGTTGACATAATTCCTCCT GACAATTCAATTCAGCCTCCAACTCCTCCCAAGAAACATAACATGCTTAGAGCCTTGTTGTTTAGGAAGAAGTGCCATGATTCTTCCAGTAAGCTATCAA AGAAGCTTTCTGCCATAGGTACAGTCGAAGAACTGTTTGAAGAAGGCTCGGCTATGCTTGCTGAAAGATTAGGGAATGATTACTCCACATCGCAATCTAC ATCTGGTCTTTTTACATGTGTTGTCTGTCAAATTGACCTTGCTCCAAGCGAGGGCATCTCTGTTCATGCTGGTTCTATCTTCTCCACCAGCTCAAAGCCT TGGCAAGGGCCTTTCCTTTGTGCTGATTGCCGTAATAAGAAGGATGCCATGGAAGGAAAACGCCCAAGTGGAGTCAAAGTGGCCTAA
AA sequence Show only first row Show all	>Potri.008G123600.9 pacid=42808517 polypeptide=Potri.008G123600.9.p locus=Potri.008G123600 ID=Potri.008G123600.9.v4.1 annot-version=v4.1 MSSGEGRRRRDNLVPLAALISREMRIEKMDKPTVKYGHAAQSRKGEDHFLIKMDCQRVPGNSSSTFSVFAIFDGHNGNAAAIYTRENLLNHILGAMPRGL GREEWIQALPRALVAGFVKTDKEFQSRGETSGTTATFVIVDRWTVTVASVGDSRCILDAQGGAVSSLTVDHRLEENVEERKRVTASGGEVGRLSIVGGVE VGPLRCWPGGLCLSRSIGDMDVGEFIVPVPYVKQVKLSNAGGRLIVASDGIWDALSSEMAAKSCRGLPAELAAKQVVKEALRTRGLKDDTTCIVVDIIPP DNSIQPPTPPKKHNMLRALLFRKKCHDSSSKLSKKLSAIGTVEELFEEGSAMLAERLGNDYSTSQSTSGLFTCVVCQIDLAPSEGISVHAGSIFSTSSKP WQGPFLCADCRNKKDAMEGKRPSGVKVA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G68410			Protein phosphatase 2C family ...		Potri.008G123600 [exp]	0	1
AT5G03680	Trihelix	PTL	PETAL LOSS, Duplicated homeodo...		Potri.010G235000 [exp]	1.00	0.8754
AT3G23750			Leucine-rich repeat protein ki...		Potri.018G141000 [exp]	2.44	0.8503	Pt-RHG4.1
AT2G01210			Leucine-rich repeat protein ki...		Potri.010G120100 [exp]	5.19	0.8611
AT5G54380		THE1	THESEUS1, protein kinase famil...		Potri.011G128000 [exp]	6.00	0.8416
AT3G53540			unknown protein		Potri.006G213700 [exp]	6.92	0.8597
AT3G23750			Leucine-rich repeat protein ki...		Potri.006G073900 [exp]	6.92	0.8152	RHG4.2
AT2G02170			Remorin family protein (.1.2)		Potri.010G098000 [exp]	7.21	0.8415
					Potri.001G456700 [exp]	7.34	0.8115
AT4G26690		GDPDL3, GPDL2, ...	SHAVEN 3, MUTANT ROOT HAIR 5, ...		Potri.001G360800 [exp]	8.00	0.8390
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Potri.013G082200 [exp]	8.36	0.8497	CESA3.1

Compare expression of checked genes

Potri.008G123600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.