Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G25380 417 / 1e-145 ATNDT2 NAD+ transporter 2, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 2, NAD+ transporter 2 (.1) AT2G47490 372 / 7e-129 ATNDT1 NAD+ transporter 1, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 1, NAD+ transporter 1 (.1) AT5G66380 171 / 2e-50 ATFOLT1 folate transporter 1 (.1) AT4G01100 119 / 1e-30 ADNT1 adenine nucleotide transporter 1 (.1.2) AT3G53940 119 / 2e-30 Mitochondrial substrate carrier family protein (.1) AT2G39970 116 / 1e-29 PXN, PMP38, APEM3 peroxisomal NAD carrier, peroxisomal membrane protein 38, ABERRANT PEROXISOME MORPHOLOGY 3, Mitochondrial substrate carrier family protein (.1) AT5G46800 113 / 1e-28 BOU A BOUT DE SOUFFLE, Mitochondrial substrate carrier family protein (.1) AT5G48970 108 / 1e-26 Mitochondrial substrate carrier family protein (.1) AT4G26180 107 / 3e-26 Mitochondrial substrate carrier family protein (.1) AT3G55640 103 / 5e-25 Mitochondrial substrate carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G121500 [exp] 602 / 0 AT1G25380 395 / 2e-137 NAD+ transporter 2, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 2, NAD+ transporter 2 (.1) Potri.002G200900 [exp] 380 / 1e-131 AT2G47490 471 / 1e-168 NAD+ transporter 1, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 1, NAD+ transporter 1 (.1) Potri.014G125600 [exp] 374 / 1e-129 AT2G47490 448 / 1e-159 NAD+ transporter 1, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 1, NAD+ transporter 1 (.1) Potri.007G019000 [exp] 163 / 2e-47 AT5G66380 463 / 8e-166 folate transporter 1 (.1) Potri.014G095400 [exp] 122 / 2e-31 AT4G01100 599 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.003G137500 [exp] 119 / 3e-30 AT4G01100 618 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.002G168100 [exp] 118 / 4e-30 AT4G01100 565 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.010G192600 [exp] 118 / 5e-30 AT2G39970 460 / 7e-164 peroxisomal NAD carrier, peroxisomal membrane protein 38, ABERRANT PEROXISOME MORPHOLOGY 3, Mitochondrial substrate carrier family protein (.1) Potri.002G000200 [exp] 117 / 2e-29 AT2G39970 389 / 3e-135 peroxisomal NAD carrier, peroxisomal membrane protein 38, ABERRANT PEROXISOME MORPHOLOGY 3, Mitochondrial substrate carrier family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034104 [exp] 435 / 1e-153 AT1G25380 414 / 3e-145 NAD+ transporter 2, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 2, NAD+ transporter 2 (.1) Lus10001463 [exp] 356 / 2e-122 AT2G47490 415 / 1e-146 NAD+ transporter 1, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 1, NAD+ transporter 1 (.1) Lus10003041 [exp] 298 / 4e-101 AT1G25380 299 / 6e-102 NAD+ transporter 2, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 2, NAD+ transporter 2 (.1) Lus10032365 [exp] 126 / 6e-33 AT4G01100 602 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10028339 [exp] 122 / 2e-32 AT5G66380 384 / 2e-135 folate transporter 1 (.1) Lus10033948 [exp] 124 / 3e-32 AT4G01100 604 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10033947 [exp] 121 / 5e-31 AT4G01100 602 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10032364 [exp] 117 / 7e-30 AT4G01100 572 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10014839 [exp] 117 / 1e-29 AT2G39970 481 / 5e-172 peroxisomal NAD carrier, peroxisomal membrane protein 38, ABERRANT PEROXISOME MORPHOLOGY 3, Mitochondrial substrate carrier family protein (.1) Lus10021497 [exp] 117 / 1e-29 AT3G53940 496 / 2e-177 Mitochondrial substrate carrier family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [poplar] [flax] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Potri.008G123700.1 pacid=42805889 polypeptide=Potri.008G123700.1.p locus=Potri.008G123700 ID=Potri.008G123700.1.v4.1 annot-version=v4.1 ATGACCGGAGGTGGGGAAGCTTCCCATAAGCGAAGCCCCAGGGAGCTAGTGTGTCATGCTGGTGCTGGTGCCTCCGCAGGTGCTATTGCAGCCACGTTTA TGTGCCCATTGGATGTGATCAAGACGAGGCTACAAGTCCATGGCTTGCCCCCCAATTCAGTTCAAGGAGGTAGTATCATCATCTCAAGTCTACAGCACAT TGTTAAAACTGAAGGTTTTAAGGGATTGTATCGTGGGCTCTCTCCAACAATAATGGCACTTCTTCCGAATTGGGCTGTGTATTTCACAGTTTATGAGCAA CTCAAAGGCATCCTTTCAGATGTGGATGGAGATGGCCAACTCTCAGTTAGTGCGAACATGGTAGCTGCTGCTGGTGCTGGTGCTGCCACAGCCACTGTAA CAAATCCTTTGTGGGTTGTGAAAACCAGACTCCAAACTCAAGGAATGAGGCCAGATCTGGTTCCTTACAAAAATGTTCTTTCTGCTTTGAGGCGGATTAC ACAAGAGGAAGGCATACGAGGGTTATATAGCGGCGTTTTGCCTTCTTTGGCCGGGATAAGTCATGTTGCAATTCAATTTCCAGCATACGAAAAGATCAAG TTTTACATGGCAAAGAGGGGTAATACAACTGTTGATAATTTGAGTCATGGGGATGTGGCAATTGCCTCATCAGTAGCCAAAATACTTGCCTCTGTACTGA CTTATCCTCATGAGGTGGTGCGTTCAAGGCTTCAAGAGCAAGGGCGTCTCAGAAATTCTGAGGTCCATTATGCCGGTGTTGTTGATTGCATTAAGAAGGT GTCCCGCAAGGAAGGCTTTCGTGGGTTTTACCGTGGCTGTGCAACTAACTTAATGAGAACGACTCCGTCTGCTGTGATTACATTTACCAGTTACGAGATG ATACTCAAGTGCTTTGAGCGAGCTCTGCCTTCAGACAAGAAGCCTTCACGCGCCCGGACCAAATCCCATGACCATGCCAAACCTCAACAGGGAAGCAGAG GAAATGTTAATAGTGACAAGGACACTGTTTCAGGGCAATCACAAACCCAGACAAATAAGACCCCCTCCATTCCTATGGGAAACCAAGAGCAGCTGCCTGC AGGGCACTGA
AA sequence Show only first row Show all	>Potri.008G123700.1 pacid=42805889 polypeptide=Potri.008G123700.1.p locus=Potri.008G123700 ID=Potri.008G123700.1.v4.1 annot-version=v4.1 MTGGGEASHKRSPRELVCHAGAGASAGAIAATFMCPLDVIKTRLQVHGLPPNSVQGGSIIISSLQHIVKTEGFKGLYRGLSPTIMALLPNWAVYFTVYEQ LKGILSDVDGDGQLSVSANMVAAAGAGAATATVTNPLWVVKTRLQTQGMRPDLVPYKNVLSALRRITQEEGIRGLYSGVLPSLAGISHVAIQFPAYEKIK FYMAKRGNTTVDNLSHGDVAIASSVAKILASVLTYPHEVVRSRLQEQGRLRNSEVHYAGVVDCIKKVSRKEGFRGFYRGCATNLMRTTPSAVITFTSYEM ILKCFERALPSDKKPSRARTKSHDHAKPQQGSRGNVNSDKDTVSGQSQTQTNKTPSIPMGNQEQLPAGH

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G25380		ATNDT2	NAD+ transporter 2, ARABIDOPSI...		Potri.008G123700 [exp]	0	1
AT1G13480			Protein of unknown function (D...		Potri.018G008300 [exp]	5.09	0.7960
AT4G21410		CRK29	cysteine-rich RLK (RECEPTOR-li...		Potri.004G026350 [exp]	6.92	0.7175
AT5G20570		HRT1, ROC1, RBX...	REGULATOR OF CULLINS-1, RING-b...		Potri.001G167400 [exp]	11.40	0.6580
AT3G54840		ARA6, AtRABF1, ...	Ras-related small GTP-binding ...		Potri.010G226300 [exp]	15.62	0.6049	ARA6.1
AT3G63380			ATPase E1-E2 type family prote...		Potri.016G009500 [exp]	18.73	0.7201
AT5G11000			Plant protein of unknown funct...		Potri.006G261300 [exp]	19.07	0.6113
AT4G17070			peptidyl-prolyl cis-trans isom...		Potri.001G150300 [exp]	22.04	0.6392
AT3G26980		MUB4	membrane-anchored ubiquitin-fo...		Potri.017G068100 [exp]	23.64	0.6172
AT3G16890		PPR40	pentatricopeptide (PPR) domain...		Potri.010G141201 [exp]	26.53	0.6738
AT3G05210		UVR7, ERCC1	UV REPAIR DEFICIENT 7, nucleot...		Potri.005G036700 [exp]	27.42	0.6141

Compare expression of checked genes

Potri.008G123700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.