Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68220 273 / 3e-94 Protein of unknown function (DUF1218) (.1) AT4G27435 149 / 1e-45 Protein of unknown function (DUF1218) (.1) AT3G15480 149 / 1e-45 Protein of unknown function (DUF1218) (.1) AT1G52910 147 / 3e-45 Protein of unknown function (DUF1218) (.1) AT1G61065 139 / 1e-41 Protein of unknown function (DUF1218) (.1) AT1G13380 129 / 1e-37 Protein of unknown function (DUF1218) (.1) AT5G17210 71 / 3e-15 Protein of unknown function (DUF1218) (.1), Protein of unknown function (DUF1218) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G120500 [exp] 359 / 2e-128 AT1G68220 284 / 2e-98 Protein of unknown function (DUF1218) (.1) Potri.001G403600 [exp] 162 / 1e-50 AT4G27435 218 / 3e-73 Protein of unknown function (DUF1218) (.1) Potri.011G122700 [exp] 149 / 8e-46 AT4G27435 213 / 3e-71 Protein of unknown function (DUF1218) (.1) Potri.010G124800 [exp] 132 / 5e-39 AT1G13380 208 / 6e-69 Protein of unknown function (DUF1218) (.1) Potri.008G120900 [exp] 132 / 6e-39 AT1G13380 200 / 9e-66 Protein of unknown function (DUF1218) (.1) Potri.004G038700 [exp] 98 / 1e-25 AT1G61065 205 / 6e-68 Protein of unknown function (DUF1218) (.1) Potri.001G403500 [exp] 82 / 2e-19 AT3G15480 106 / 3e-29 Protein of unknown function (DUF1218) (.1) Potri.019G048300 [exp] 73 / 6e-16 AT5G17210 188 / 1e-60 Protein of unknown function (DUF1218) (.1), Protein of unknown function (DUF1218) (.2) Potri.008G108900 [exp] 40 / 0.0004 AT5G49320 281 / 2e-95 Protein of unknown function (DUF1218) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043484 [exp] 310 / 1e-108 AT1G68220 276 / 2e-95 Protein of unknown function (DUF1218) (.1) Lus10034105 [exp] 315 / 7e-107 AT1G31860 367 / 1e-125 HISTIDINE BIOSYNTHESIS 2, histidine biosynthesis bifunctional protein (HISIE) (.1) Lus10032662 [exp] 162 / 1e-50 AT3G15480 256 / 3e-88 Protein of unknown function (DUF1218) (.1) Lus10043091 [exp] 162 / 2e-50 AT3G15480 258 / 7e-89 Protein of unknown function (DUF1218) (.1) Lus10018474 [exp] 131 / 1e-38 AT1G61065 219 / 2e-73 Protein of unknown function (DUF1218) (.1) Lus10034324 [exp] 130 / 3e-38 AT1G13380 275 / 2e-95 Protein of unknown function (DUF1218) (.1) Lus10041447 [exp] 130 / 3e-38 AT1G13380 273 / 1e-94 Protein of unknown function (DUF1218) (.1) Lus10032663 [exp] 103 / 5e-28 AT4G27435 103 / 4e-28 Protein of unknown function (DUF1218) (.1) Lus10010077 [exp] 71 / 8e-15 AT5G17210 263 / 8e-90 Protein of unknown function (DUF1218) (.1), Protein of unknown function (DUF1218) (.2) Lus10011208 [exp] 67 / 7e-14 AT1G61065 118 / 3e-34 Protein of unknown function (DUF1218) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06749 [poplar] [flax] DUF1218 Protein of unknown function (DUF1218)
Representative CDS sequence Show only first row Show all	>Potri.008G124100.1 pacid=42808327 polypeptide=Potri.008G124100.1.p locus=Potri.008G124100 ID=Potri.008G124100.1.v4.1 annot-version=v4.1 ATGGCGGTCTCAATCTCCATTTCTGTCATCATCACCTCTCTTCACCTCGTCGCCTTCGTCCTCGCCATCGGCGCTGAAAGCCGCCGCAGCACCGCTAAGG TGGTGCCTGATCAGTACGATGAGAGCACTTACTGCGTGTATGATACGGACGCGTCTACGGTGTACGGATTAGCTGCGTTTGGGCTGCTACTTATTAGCCA AATGATTGTTAATGGCGTTACTAGGTGTCTCTGCTTTGGAAAAGGCCTTGTTACTGGAAGCTGCTCCACTACTTGTGCCATCATCTTCTTCATCGTTTCC TGGTTAAGCTTTTTGGGAGCCGAGGCATGCTTATTAGCTGGATCAGCAAGGAATGCATATCATACCAAATACCGAGGATTCTTTCGTCAGGGTGACTTAT CATGTGCCACACTCCGCAGAGGTGTCTTTGCTGCCGGTGCAGCTCTTACATTGTTATCACTGATAGGGTCAATCCTTTACTATTGGGCTCACTCGAGAGC TGATACTGGTGGATGGGAGAAGCACCAGAATGAAGGCGTTGGGATGACCAGTGCAAGTTACCCCCAGCAGCAACAAACTGGTGAATTTGAGAAGGCTTGA
AA sequence Show only first row Show all	>Potri.008G124100.1 pacid=42808327 polypeptide=Potri.008G124100.1.p locus=Potri.008G124100 ID=Potri.008G124100.1.v4.1 annot-version=v4.1 MAVSISISVIITSLHLVAFVLAIGAESRRSTAKVVPDQYDESTYCVYDTDASTVYGLAAFGLLLISQMIVNGVTRCLCFGKGLVTGSCSTTCAIIFFIVS WLSFLGAEACLLAGSARNAYHTKYRGFFRQGDLSCATLRRGVFAAGAALTLLSLIGSILYYWAHSRADTGGWEKHQNEGVGMTSASYPQQQQTGEFEKA

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G68220			Protein of unknown function (D...		Potri.008G124100 [exp]	0	1
AT3G29280			unknown protein		Potri.017G090400 [exp]	5.74	0.8123
AT5G14500			aldose 1-epimerase family prot...		Potri.001G344100 [exp]	6.16	0.8627
AT3G58500		PP2A-4, EP7, PP...	protein phosphatase 2A-4 (.1)		Potri.006G196100 [exp]	8.48	0.8048
AT1G51730			Ubiquitin-conjugating enzyme f...		Potri.001G199500 [exp]	8.60	0.7475
AT3G53220			Thioredoxin superfamily protei...		Potri.006G123100 [exp]	9.05	0.8660
AT3G61113			Ubiquitin related modifier 1 (...		Potri.014G078200 [exp]	9.32	0.7767
AT2G18050		HIS1-3	histone H1-3 (.1.2)		Potri.005G116600 [exp]	10.19	0.7914	HIS1.2
AT1G69390		ARC12, ATMINE1	accumulation and replication o...		Potri.010G162600 [exp]	13.26	0.7837
AT3G17980		AtC2	Arabidopsis thaliana C2 domain...		Potri.004G089500 [exp]	14.42	0.7845
AT3G10210			SEC14 cytosolic factor family ...		Potri.006G043166 [exp]	19.89	0.7850

Compare expression of checked genes

Potri.008G124100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.