Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01210 988 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G25320 880 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G66830 652 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G67510 523 / 6e-177 Leucine-rich repeat protein kinase family protein (.1) AT4G37250 446 / 1e-146 Leucine-rich repeat protein kinase family protein (.1) AT2G23300 410 / 1e-132 Leucine-rich repeat protein kinase family protein (.1) AT4G34220 394 / 2e-126 Leucine-rich repeat protein kinase family protein (.1) AT2G42290 390 / 2e-126 Leucine-rich repeat protein kinase family protein (.1) AT3G57830 377 / 3e-121 Leucine-rich repeat protein kinase family protein (.1) AT2G15300 367 / 2e-116 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G120100 [exp] 1251 / 0 AT2G01210 1013 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G095700 [exp] 745 / 0 AT2G01210 735 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G119000 [exp] 718 / 0 AT2G01210 711 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G058200 [exp] 554 / 0 AT1G67510 989 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G176900 [exp] 540 / 0 AT1G67510 923 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.007G048800 [exp] 447 / 7e-147 AT2G23300 706 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G142300 [exp] 444 / 9e-146 AT4G37250 733 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G300700 [exp] 402 / 1e-129 AT4G34220 620 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.016G050800 [exp] 366 / 6e-117 AT3G57830 713 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043480 [exp] 952 / 0 AT2G01210 879 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10034108 [exp] 943 / 0 AT2G01210 860 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033569 [exp] 659 / 0 AT1G66830 665 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10017611 [exp] 655 / 0 AT1G66830 672 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10015799 [exp] 502 / 2e-168 AT1G67510 959 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10037006 [exp] 469 / 2e-156 AT1G67510 915 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10019315 [exp] 395 / 2e-127 AT4G37250 728 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030333 [exp] 395 / 8e-127 AT4G37250 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011509 [exp] 375 / 2e-119 AT4G37250 739 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10021022 [exp] 332 / 4e-104 AT3G57830 639 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.008G124300.1 pacid=42806995 polypeptide=Potri.008G124300.1.p locus=Potri.008G124300 ID=Potri.008G124300.1.v4.1 annot-version=v4.1 ATGGTCACTTTGTTTGTAGACATGTTCTCTTTGAGTTTGCTGGTTCTTGTTCTCTTTAACTCTTACAGTCTAGTGACTTCTTTGAATAGTGAAGGGTATG CACTATTGTCGTTTAAGCAGTCTATTAACGAAGATCCAGAAGGGTCTTTGAGTAACTGGAACTCCTCTGATGACAACCCTTGTTCATGGAATGGGGTTAC ATGCAAGGACCTTAAAGTCATGTCTCTCAGTATTCCAAAGAAGAAACTCTATGGGTTTCTTCCTTCTGCTCTTGGGTCACTCTCTGACCTTAGACATATA AATTTGAGGAATAATAGGTTCTTCGGCCCTTTGCCTGCTGAGCTCTTTCAAGCTCAAGGACTACAAAGTTTGGTCCTTTATGGGAATTCCTTTTCTGGGT CTTTGCCAAATCAGATTGGCAAGCTCAAGTACCTCCAAACCTTGGATTTATCCCAGAATTTCTTCAATGGGTCAATACCCACGTCAATTGTTCAATGCAG GAGACATAGGGTCCTTGATCTTAGCCAAAACAATTTCACTGGTTCTTTGCCAGTTGGGTTTGGTACTGGTTTGGTTTCCCTTGAAAAACTTGATCTTTCG TTCAATAAATTCAATGGTTCGATTCCTAGTGATATGGGAAATCTGTCTAGCTTACAAGGGACTGCTGACTTGTCACACAATCTCTTTACTGGTTCAATCC CAGCTAGCCTTGGAAACCTTCCTGAGAAGGTTTATATTGATCTAACTTATAACAATTTGAGCGGTCCAATACCTCAAAATGGTGCTCTAATGAACAGAGG TCCTACAGCATTTATTGGAAATCCTGGTCTCTGTGGCCCTCCATTGAAAAATCCATGTCCTTCGGATACCGCCGGTGCAAGTGCACCTTCAGCAATCCCT TTTTTGCCTAATAACTCCCCCCCTCAAGATTCAGATAACAGTGGCAGAAAGAGTGAGAAAGGAAGAGGACTGAGTAAGAGTGCAGTTGTTGCGATAATTG TGAGTGATGTCATTGGGATTTGCCTCGTTGGATTGTTGTTTTCGTATTGTTATTCTAGAGCTTGTCCACGCCGTAAGGATAAGGATGAAAATGATAATGG TTTTGAGAAGGGAGGGAAGAGAAGGAAAGGGTGCTTGCGCTTTAGGAAGGATGAGTCCGAGACTCTATCTGAGAACGTGGAGCAGTGTGACCTTGTGCCA CTGGATGCGCAGGTGGCTTTTGATTTGGATGAGCTGCTTAAAGCGTCTGCTTTTGTTTTAGGGAAGGGTGGAATTGGGATTGCTTACAAAGTTGTGCTTG AAGATGGGTATACTTTAGCTGTGAGAAGATTGGGCGAGGGAGGCTCTCAACGATTTAAGGAATTCCAAACGGAAGTGGAAGCAATTGGCAAGCTAAGGCA TCCTAATGTTGTGACTCTCAGAGCATATTACTGGTCTGTTGATGAGAAGTTGCTTATCTATGATTACATACCGAATGGAAGTCTTGACACAGCACTTCAT GGGAAGCCTGGAATGGTGTCATTCACCCCATTATCATGGTCTGTTCGGTTGACAATCATAAAGGGAATTGCGAGAGGCTTGGTTTATCTTCATGAATTCA GCACTAAAAAATATGTTCATGGAGATCTGAAGCCAAGTAATGTGCTTCTTGGACAGAACATGGAACCACACATTTCTGATTTTGGACTTGGTCGACTTGC TACTATTGCTGGAGGGTCCCCAACACGGGAATCTAATCGATCTACCTTGGAAAAACCACAAGAGAGGCAACAGAAGGGTGAGCCAAGCTCAGAAGTTGCC ACAGTTTCATCTACAAACTTGGTATCTTATTACCAGGCTCCTGAAGCACTAAAAGTTCTAAAACCATCACAAAAATGGGATGTTTACTCTTGTGGAGTTA TCTTACTAGAAATGATCACAGGAAGGTCGCCAGTGGTCTGTGTCGGTACCTCAGAGATGGATCTCGTTCACTGGATCCAGCTTTGCATTGAAGAGCAGAA ACCACTTGTAGATGTCTTAGATCCGTACTTAGCTCCTGATGTGGATAAGGAAGAAGAAGAGATTGTTGCCGTTTTGAAGATTGCAATGGCTTGTGTTCAT AGCAACCCTGAAAGGAGGCCTACGATGAGGCATGTCTCTGATGTTTTTAACAGATTGGTTATATCCTCTGCTTAA
AA sequence Show only first row Show all	>Potri.008G124300.1 pacid=42806995 polypeptide=Potri.008G124300.1.p locus=Potri.008G124300 ID=Potri.008G124300.1.v4.1 annot-version=v4.1 MVTLFVDMFSLSLLVLVLFNSYSLVTSLNSEGYALLSFKQSINEDPEGSLSNWNSSDDNPCSWNGVTCKDLKVMSLSIPKKKLYGFLPSALGSLSDLRHI NLRNNRFFGPLPAELFQAQGLQSLVLYGNSFSGSLPNQIGKLKYLQTLDLSQNFFNGSIPTSIVQCRRHRVLDLSQNNFTGSLPVGFGTGLVSLEKLDLS FNKFNGSIPSDMGNLSSLQGTADLSHNLFTGSIPASLGNLPEKVYIDLTYNNLSGPIPQNGALMNRGPTAFIGNPGLCGPPLKNPCPSDTAGASAPSAIP FLPNNSPPQDSDNSGRKSEKGRGLSKSAVVAIIVSDVIGICLVGLLFSYCYSRACPRRKDKDENDNGFEKGGKRRKGCLRFRKDESETLSENVEQCDLVP LDAQVAFDLDELLKASAFVLGKGGIGIAYKVVLEDGYTLAVRRLGEGGSQRFKEFQTEVEAIGKLRHPNVVTLRAYYWSVDEKLLIYDYIPNGSLDTALH GKPGMVSFTPLSWSVRLTIIKGIARGLVYLHEFSTKKYVHGDLKPSNVLLGQNMEPHISDFGLGRLATIAGGSPTRESNRSTLEKPQERQQKGEPSSEVA TVSSTNLVSYYQAPEALKVLKPSQKWDVYSCGVILLEMITGRSPVVCVGTSEMDLVHWIQLCIEEQKPLVDVLDPYLAPDVDKEEEEIVAVLKIAMACVH SNPERRPTMRHVSDVFNRLVISSA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G01210			Leucine-rich repeat protein ki...		Potri.008G124300 [exp]	0	1
AT4G12110		ATSMO1-1, SMO1-...	sterol-4alpha-methyl oxidase 1...		Potri.001G116500 [exp]	1.73	0.7861	SMO1.2
AT3G26700			Protein kinase superfamily pro...		Potri.002G237600 [exp]	2.00	0.7626
AT4G34160		CYCD3;1	CYCLIN D3;1 (.1)		Potri.009G097800 [exp]	2.00	0.7796	CYCD3.2
AT5G55730		FLA1	FASCICLIN-like arabinogalactan...		Potri.001G367900 [exp]	2.44	0.7708
AT3G61250	MYB	LMI2, ATMYB17	LATE MERISTEM IDENTITY2, myb d...		Potri.015G143500 [exp]	7.34	0.7435
AT5G55540		LOP1, TRN1	LOPPED 1, tornado 1 (.1)		Potri.001G361200 [exp]	7.74	0.7536
AT4G32410		AtCESA1, RSW1, ...	RADIALLY SWOLLEN 1, cellulose ...		Potri.018G029400 [exp]	8.48	0.7073	Pt-CESA1.2
AT4G34880			Amidase family protein (.1)		Potri.009G130500 [exp]	9.89	0.6968
AT2G15320			Leucine-rich repeat (LRR) fami...		Potri.009G097100 [exp]	11.22	0.6840
AT3G23750			Leucine-rich repeat protein ki...		Potri.006G073900 [exp]	11.31	0.7259	RHG4.2

Compare expression of checked genes

Potri.008G124300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.