Plant FIBer expression Database

Potri.008G124900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G02600 422 / 1e-148 ATLPP3, LPP3 lipid phosphate phosphatase 3 (.1.2.3.4.5)
AT2G01180 395 / 3e-138 ATLPP1, ATPAP1 LIPID PHOSPHATE PHOSPHATASE 1, phosphatidic acid phosphatase 1 (.1.2)
AT1G15080 375 / 5e-131 ATLPP2, LPP2, ATPAP2 PHOSPHATIDIC ACID PHOSPHATASE 2, lipid phosphate phosphatase 2 (.1)
AT3G18220 292 / 3e-98 Phosphatidic acid phosphatase (PAP2) family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G119400
[exp]
552 / 0 AT3G02600 407 / 9e-143 lipid phosphate phosphatase 3 (.1.2.3.4.5)
Potri.017G119500
[exp]
431 / 2e-152 AT3G02600 460 / 1e-163 lipid phosphate phosphatase 3 (.1.2.3.4.5)
Potri.004G095400
[exp]
422 / 2e-148 AT3G02600 465 / 1e-164 lipid phosphate phosphatase 3 (.1.2.3.4.5)
Potri.010G119300
[exp]
378 / 7e-132 AT1G15080 452 / 1e-161 PHOSPHATIDIC ACID PHOSPHATASE 2, lipid phosphate phosphatase 2 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10009155
[exp]
418 / 7e-146 AT3G02600 488 / 1e-172 lipid phosphate phosphatase 3 (.1.2.3.4.5)
Lus10035262
[exp]
405 / 3e-142 AT3G02600 429 / 3e-151 lipid phosphate phosphatase 3 (.1.2.3.4.5)
Lus10028489
[exp]
400 / 3e-140 AT3G02600 465 / 1e-166 lipid phosphate phosphatase 3 (.1.2.3.4.5)
Lus10007933
[exp]
416 / 1e-139 AT2G01600 758 / 0.0 ENTH/ANTH/VHS superfamily protein (.1)
Lus10034630
[exp]
391 / 2e-136 AT3G02600 418 / 4e-147 lipid phosphate phosphatase 3 (.1.2.3.4.5)
Lus10034629
[exp]
359 / 2e-124 AT1G15080 442 / 4e-158 PHOSPHATIDIC ACID PHOSPHATASE 2, lipid phosphate phosphatase 2 (.1)
Lus10035261
[exp]
353 / 3e-122 AT1G15080 443 / 2e-158 PHOSPHATIDIC ACID PHOSPHATASE 2, lipid phosphate phosphatase 2 (.1)
Lus10013470
[exp]
329 / 2e-113 AT3G02600 326 / 1e-112 lipid phosphate phosphatase 3 (.1.2.3.4.5)
Lus10013469
[exp]
89 / 4e-19 AT2G01600 758 / 0.0 ENTH/ANTH/VHS superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0525 pap2 PF01569 PAP2 PAP2 superfamily
Representative CDS sequence
>Potri.008G124900.4 pacid=42806478 polypeptide=Potri.008G124900.4.p locus=Potri.008G124900 ID=Potri.008G124900.4.v4.1 annot-version=v4.1
ATGGCGTGGAGTAATATGTTCTCATATTTTTCTTTCCCGAATTTCTATCGTATCTTTCAGGGCAGAGTGAGGTCGGCAGAGATGGGTACACACACTATCA
AATCTCATGGAACCAAAGTTGCGAGGGATCACATGCTGGACTGGCTTATTCTACTGCTACTTGTGTTGATTGAGGTCATTCTCTATGTAATCCATCCTTT
TTACCGATTTGTGGGAAGGGATATGATGACAGACCTGAAATATCCTGTGAAAGAAAACACAGTGCCTGCATGGAGTGTTCCTATGTACACAGTTTTTTTG
CCCATTGCTGTTTTCCTTTTATTCTATACGCGAAGGAAAGATGTCTATGATCTGCATCACAGCATCTTAGGCCTCTTATTTTCTGTGCTGATTACTGCGG
TCATCACGGATGCAATAAAAAATGCAGTTGGCCGGCCTCGACCAGACTTCTTTTGGCGCTGCTTTCCTGATGGGAATGAACTCTATAATCGGTGGGGAAA
TGCAGTATGTCATGGTAGAGAAAGTGACATTAGGGAAGGACATAAGAGTTTCCCAAGCGGCCATACTTCTTGGTCCTTTGCTGGATTAGGTTTTCTCTCA
ATTTACTTATCTGGGAAAATCAAAGCATTTGATCAGAAAGGGCACGTGGCAAAGCTGTGCATTGTTTTTTTTCCTCTGCTTATGGCATCTCTTGTAGGCA
TCTCTCGAGTTGATGATTACGGGCATCATTGGCAGGATGTGTTCGCTGGAGGCCTTCTAGGGCTGGTTGTGGCCACATTCTGCTATGCACAGTTATTCCC
ACCCCCATATAATGATGAAGGATGGGGACCTTACGAATATTTCAGAGCAATGGAGGAGTCACGTTCCAATACAAATTCAGGGGAGTCTGTGAATGAACTT
GACGTGCAGCCCATGAGTTTAGCCGTTGTGAGTCAGCAAGTCAGGAAACACGGAAACGAGTTTGCTGCTTTGGAGGATTTGGAATCCGGTAGGAGGTGA
AA sequence
>Potri.008G124900.4 pacid=42806478 polypeptide=Potri.008G124900.4.p locus=Potri.008G124900 ID=Potri.008G124900.4.v4.1 annot-version=v4.1
MAWSNMFSYFSFPNFYRIFQGRVRSAEMGTHTIKSHGTKVARDHMLDWLILLLLVLIEVILYVIHPFYRFVGRDMMTDLKYPVKENTVPAWSVPMYTVFL
PIAVFLLFYTRRKDVYDLHHSILGLLFSVLITAVITDAIKNAVGRPRPDFFWRCFPDGNELYNRWGNAVCHGRESDIREGHKSFPSGHTSWSFAGLGFLS
IYLSGKIKAFDQKGHVAKLCIVFFPLLMASLVGISRVDDYGHHWQDVFAGGLLGLVVATFCYAQLFPPPYNDEGWGPYEYFRAMEESRSNTNSGESVNEL
DVQPMSLAVVSQQVRKHGNEFAALEDLESGRR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G02600 ATLPP3, LPP3 lipid phosphate phosphatase 3 ... Potri.008G124900
[exp]
0 1
AT5G16490 RIC4 ROP-interactive CRIB motif-con... Potri.019G053300
[exp]
4.89 0.8372
AT4G16400 unknown protein Potri.006G017900
[exp]
5.47 0.8148
AT1G75840 ATROP4, ATGP3, ... RHO-LIKE GTP BINDING PROTEIN 4... Potri.013G123800
[exp]
6.00 0.8305
AT5G01430 Got1/Sft2-like vescicle transp... Potri.007G124400
[exp]
11.09 0.8214
AT3G51780 ATBAG4 BCL-2-associated athanogene 4 ... Potri.001G279500
[exp]
15.58 0.7972
AT1G47410 unknown protein Potri.002G127800
[exp]
19.74 0.7971
AT5G50870 UBC27 ubiquitin-conjugating enzyme 2... Potri.015G103400
[exp]
24.00 0.7840
AT1G07120 unknown protein Potri.001G279000
[exp]
24.24 0.8168
AT3G60890 ZPR2 LITTLE ZIPPER 2, protein bindi... Potri.001G114900
[exp]
25.69 0.7407
AT1G63930 ROH1 from the Czech 'roh' meaning '... Potri.001G099700
[exp]
28.61 0.7157

Potri.008G124900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.