Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	CYP96.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39490 410 / 4e-139 CYP96A10 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) AT2G23180 405 / 2e-137 CYP96A1 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) AT4G39510 405 / 3e-137 CYP96A12 "cytochrome P450, family 96, subfamily A, polypeptide 12", cytochrome P450, family 96, subfamily A, polypeptide 12 (.1) AT1G47620 405 / 4e-137 CYP96A8 "cytochrome P450, family 96, subfamily A, polypeptide 8", cytochrome P450, family 96, subfamily A, polypeptide 8 (.1) AT4G32170 399 / 9e-135 CYP96A2 "cytochrome P450, family 96, subfamily A, polypeptide 2", cytochrome P450, family 96, subfamily A, polypeptide 2 (.1) AT2G21910 395 / 3e-133 CYP96A5 "cytochrome P450, family 96, subfamily A, polypeptide 5", cytochrome P450, family 96, subfamily A, polypeptide 5 (.1) AT1G65340 391 / 7e-132 CYP96A3 "cytochrome P450, family 96, subfamily A, polypeptide 3", cytochrome P450, family 96, subfamily A, polypeptide 3 (.1) AT1G57750 390 / 3e-131 MAH1, CYP96A15 MID-CHAIN ALKANE HYDROXYLASE 1, "cytochrome P450, family 96, subfamily A, polypeptide 15", cytochrome P450, family 96, subfamily A, polypeptide 15 (.1.2) AT5G52320 382 / 4e-128 CYP96A4 "cytochrome P450, family 96, subfamily A, polypeptide 4", cytochrome P450, family 96, subfamily A, polypeptide 4 (.1) AT4G39480 370 / 1e-123 CYP96A9 "cytochrome P450, family 96, subfamily A, polypeptide 9", cytochrome P450, family 96, subfamily A, polypeptide 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G132800 [exp] 494 / 3e-172 AT4G39490 589 / 0.0 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Potri.007G080300 [exp] 476 / 1e-164 AT4G39490 574 / 0.0 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Potri.005G094500 [exp] 442 / 6e-152 AT1G47620 372 / 7e-124 "cytochrome P450, family 96, subfamily A, polypeptide 8", cytochrome P450, family 96, subfamily A, polypeptide 8 (.1) Potri.001G397900 [exp] 389 / 1e-130 AT4G39490 480 / 6e-166 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Potri.005G064400 [exp] 388 / 2e-130 AT4G39490 477 / 8e-165 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Potri.015G086900 [exp] 368 / 1e-122 AT2G23180 455 / 2e-156 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) Potri.007G072100 [exp] 346 / 2e-113 AT5G23190 799 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Potri.005G092200 [exp] 342 / 2e-111 AT5G23190 788 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Potri.010G050100 [exp] 306 / 2e-98 AT1G24540 684 / 0.0 "cytochrome P450, family 86, subfamily C, polypeptide 1", cytochrome P450, family 86, subfamily C, polypeptide 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002527 [exp] 359 / 3e-119 AT2G23180 454 / 7e-156 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) Lus10003669 [exp] 348 / 9e-115 AT2G23180 440 / 4e-150 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) Lus10022279 [exp] 346 / 6e-114 AT2G23180 449 / 4e-154 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) Lus10040986 [exp] 319 / 4e-103 AT5G23190 751 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Lus10017394 [exp] 318 / 2e-102 AT5G23190 739 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Lus10010193 [exp] 315 / 2e-101 AT5G23190 741 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Lus10002525 [exp] 311 / 4e-100 AT4G39490 410 / 2e-138 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Lus10025678 [exp] 308 / 1e-99 AT4G39490 363 / 9e-121 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Lus10028047 [exp] 303 / 1e-97 AT2G21910 375 / 1e-125 "cytochrome P450, family 96, subfamily A, polypeptide 5", cytochrome P450, family 96, subfamily A, polypeptide 5 (.1) Lus10035234 [exp] 303 / 2e-97 AT4G39490 382 / 1e-127 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.008G125300.1 pacid=42808847 polypeptide=Potri.008G125300.1.p locus=Potri.008G125300 ID=Potri.008G125300.1.v4.1 annot-version=v4.1 ATGGTAGCAGAATCCATTTTGGCCATTGCTTTCTTTCTCGTCCTCATTTGCTTGTTTAGAAGCAAAAATGGCCTTCCATGGAACTGGCCCCTCCTTGGCA TGTCCCCAACGCTTCTTCTCAACTCTCACCGGTTTTACGAACTAGCTGATGAAATTCTCGAGATAAGCGGAGGTACTTATTTATTCAAAGGTCTTTGGTT TTCAAACATGGATATGTGGTTCACAAGCGATCCAGAAAATGTGCACTACATAACAACAACAAACTACTGGAATTACCCCAAAGGGCCTGAGTCGATGCAG GTGTTTGATACCCTGGGAAATTCGCTTTTCAATTTGGATTTCGAGGAGTGGACTTACTATAGAGGACTCCTCCATGGCTTTTTCAGTCACCAGAAGTTTC ACCAATTCGTTCCGAAGGTTTTGGTTGACAATGTGAACAAAGGTCTGGTGCCATTTCTTGAGGACGTAGCAAAACAGGCTTTGGTGGTGGATTTGCAAGA TATGTTTAAAAGGCATATATACGATGCTGCTTGCGCGATAGCTACTGGATATAACCCCAAAACCCTCTCCATTGGTTTTGAGGAAAATGCATTCGTAAGG GCCATGGATGATGCCTGTGTAGCAATGTTAACTAGGCACATCTTGCCAGGGAGATGCTGGAAGTTGCTAAGGTGGTTACAGATTGGAAGTGAAAAGAGAC TAAGTGTTGCAAAGGGTACTTTACAGGAACTTAGTGCAGGAGCCAAAACAAAGGAAGACGAAGAGACCTTCGATGTGTTGCGATCTTTCTTGACTATAAA TGATGTCAATGACAAAGAACACCCTGATGAAATTGTAAGAGACAGTACCATAGGTATTATTTTTGCAGCATATGACACCTCCAGTGCAACTCTCTCTTGG TTCTTCTGGCTTCTTTCAAAGAATCCGCATGTCGAAACTAAAATCAGAGAAGAGCTTGACTCCAATTTCTCAGTGAAGGAAGGTCAAAATTGGCAGCTAA ATAGCAGAAAAGAGTTGAGCAAGCTGGTTTATCTCCATGCTACCTTGTGTGAAACGCTAAGGCTATACCCGCCAGTTCCTCTCCAGAGAAGGACTCCAGT TAGACCTGACATTTTTCCAAGCGGTCACCATGTAGATCCAAAGGCTATTGTTGTTTTGTCAGGATATGCAATTGGAAGGATGGCTAGGGTATGGGGACAG GATTGCCATGAATTCAAGCCTGAGAGATGGATCAATGAGAAAGGAGATCTTAAATATGAAAGATCGGCCAAGTTCTTTACCTTCAACGCAGGACCTAGGA TTTGTCCAGGGAAGGAGATGGCGTTTAGTATCATGAAGGCCGCCGCTGCAACTATTCTTTATAACTACCATGTTCAAGTTGTGGAAACCCGCCCTGTGAC CCCCAAAGCTAGTATAATTCTTCAAATGAAACATGGTTTGAGGGCTAGGATTTGCAGTAGATGGACTTGA
AA sequence Show only first row Show all	>Potri.008G125300.1 pacid=42808847 polypeptide=Potri.008G125300.1.p locus=Potri.008G125300 ID=Potri.008G125300.1.v4.1 annot-version=v4.1 MVAESILAIAFFLVLICLFRSKNGLPWNWPLLGMSPTLLLNSHRFYELADEILEISGGTYLFKGLWFSNMDMWFTSDPENVHYITTTNYWNYPKGPESMQ VFDTLGNSLFNLDFEEWTYYRGLLHGFFSHQKFHQFVPKVLVDNVNKGLVPFLEDVAKQALVVDLQDMFKRHIYDAACAIATGYNPKTLSIGFEENAFVR AMDDACVAMLTRHILPGRCWKLLRWLQIGSEKRLSVAKGTLQELSAGAKTKEDEETFDVLRSFLTINDVNDKEHPDEIVRDSTIGIIFAAYDTSSATLSW FFWLLSKNPHVETKIREELDSNFSVKEGQNWQLNSRKELSKLVYLHATLCETLRLYPPVPLQRRTPVRPDIFPSGHHVDPKAIVVLSGYAIGRMARVWGQ DCHEFKPERWINEKGDLKYERSAKFFTFNAGPRICPGKEMAFSIMKAAAATILYNYHVQVVETRPVTPKASIILQMKHGLRARICSRWT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G39490		CYP96A10	"cytochrome P450, family 96, s...		Potri.008G125300 [exp]	0	1	CYP96.3
AT1G16930			F-box/RNI-like/FBD-like domain...		Potri.011G121400 [exp]	7.74	0.5914
AT5G15110			Pectate lyase family protein (...		Potri.008G148800 [exp]	30.24	0.5956
AT3G45670			Protein kinase superfamily pro...		Potri.006G181000 [exp]	31.62	0.6253
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Potri.019G023002 [exp]	42.49	0.5695
AT3G44680		HDA09, HDA9	histone deacetylase 9 (.1)		Potri.011G156250 [exp]	59.69	0.5409
					Potri.018G058450 [exp]	66.93	0.5489
AT4G18770	MYB	ATMYB98	myb domain protein 98 (.1)		Potri.015G077700 [exp]	66.99	0.5343
AT3G47870	AS2	ASL29, SCP, LBD...	SIDECAR POLLEN, ASYMMETRIC LEA...		Potri.015G066700 [exp]	74.47	0.5577	LBD27.2
AT2G27500			Glycosyl hydrolase superfamily...		Potri.004G097400 [exp]	78.40	0.5581
AT3G28050			nodulin MtN21 /EamA-like trans...		Potri.001G032100 [exp]	84.42	0.5750

Compare expression of checked genes

Potri.008G125300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.